Os10g0109100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0109100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 476.71 | 1.03 | 3.64 | 0.133 | 0.132 | -0.793 | -0.569 | -0.489 | -0.136 | 15.1 | 1005 | 1631 | -- | -- |
| 477.26 | 1.02 | 3.64 | 0.125 | 0.141 | -0.805 | -0.624 | -- | -0.115 | 15.2 | 1005 | 1610 | -- | -- |
| 477.48 | 1.02 | 3.64 | 0.123 | 0.153 | -0.786 | -- | -0.533 | -0.141 | 16.9 | 1005 | 1630 | -- | -- |
| 478.21 | 1.02 | 3.64 | 0.115 | 0.163 | -0.801 | -- | -- | -0.117 | 17 | 1005 | 1610 | -- | -- |
| 478.71 | 1.02 | 3.64 | 0.118 | -- | -0.785 | -- | -0.576 | -0.144 | -- | 1005 | 1630 | -- | -- |
| 509.28 | 1.06 | 3.7 | 0.183 | 0.0978 | -- | -0.555 | -- | -0.384 | 14.3 | -- | -- | -- | -- |
| 509.86 | 1.06 | 3.7 | 0.169 | 0.146 | -- | -- | -- | -0.386 | 17.2 | -- | -- | -- | -- |
| 479.59 | 1.02 | 3.64 | 0.116 | -- | -0.799 | -- | -- | -0.133 | -- | 1005 | 1629 | -- | -- |
| 478.56 | 1.02 | 3.64 | -- | 0.16 | -0.801 | -- | -- | -0.131 | 17 | 1005 | 1610 | -- | -- |
| 510.97 | 1.06 | 3.7 | 0.164 | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
| 510.61 | 1.06 | 3.71 | -- | 0.143 | -- | -- | -- | -0.405 | 17.3 | -- | -- | -- | -- |
| 479.92 | 1.02 | 3.64 | -- | -- | -0.799 | -- | -- | -0.136 | -- | 1005 | 1610 | -- | -- |
| 511.67 | 1.06 | 3.7 | -- | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 472.31 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 3 | 472.96 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 5 | 473.14 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 7 | 473.18 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 24 | 3 |
| 8 | 473.19 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 9 | 473.19 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 11 | 473.24 | humidity | 80 | 4320 | > th | dose dependent | rect. | 10 | 3 |
| 12 | 473.30 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 14 | 473.38 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 18 | 473.45 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 54 | 474.44 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 58 | 474.55 | humidity | 80 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 65 | 474.63 | atmosphere | 1005 | 1440 | > th | dose independent | sin | 9 | NA |
| 76 | 474.89 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 81 | 474.95 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 85 | 474.96 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 102 | 475.15 | humidity | 80 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 124 | 475.43 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 180 | 475.98 | atmosphere | 1005 | 1440 | < th | dose independent | sin | 8 | NA |
| 198 | 476.16 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 203 | 476.23 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 214 | 476.28 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 240 | 476.57 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 280 | 476.87 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 295 | 476.98 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 2 | 21 |
| 303 | 477.04 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 10 | 19 |
| 326 | 477.18 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 459 | 477.96 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 460 | 477.97 | atmosphere | 1005 | 1440 | > th | dose independent | no | NA | NA |
| 484 | 478.08 | humidity | 80 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 501 | 478.15 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 543 | 478.41 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 551 | 478.44 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 581 | 478.58 | atmosphere | 1005 | 1440 | < th | dose independent | no | NA | NA |
| 605 | 478.67 | wind | 9 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 622 | 478.74 | humidity | 70 | 4320 | > th | dose dependent | rect. | 2 | 14 |
| 650 | 478.86 | humidity | 90 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 710 | 479.14 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 716 | 479.18 | wind | 3 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 729 | 479.25 | humidity | 70 | 4320 | > th | dose dependent | sin | 3 | NA |
| 737 | 479.31 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 755 | 479.43 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 784 | 479.59 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 799 | 479.66 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 21 |
| 830 | 479.79 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 14 | 18 |
| 838 | 479.81 | wind | 3 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 853 | 479.90 | humidity | 60 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 890 | 480.04 | humidity | 80 | 4320 | > th | dose independent | sin | 1 | NA |
| 993 | 480.43 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 18 | 15 |