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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0108700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0181) R2 : 0.0431
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.172 (0.038) R2dN8 : 0.0557 R2N8 : 0.0431
σ : 0.34
deviance : 53.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.97 0.332 2.85 0.0176 0.0253 -0.364 0.0568 0.402 0.178 19.8 1 16 -- --
50.11 0.33 2.85 0.0332 0.0196 -0.34 0.0851 -- 0.181 18.6 1.034 16 -- --
49.98 0.329 2.85 0.0163 0.0249 -0.361 -- 0.401 0.178 20.7 1.005 16 -- --
50.12 0.33 2.85 0.0326 0.022 -0.331 -- -- 0.182 21.3 1.082 16 -- --
50.01 0.329 2.85 0.0174 -- -0.356 -- 0.391 0.178 -- 1.013 16 -- --
52.48 0.34 2.85 0.0719 0.0875 -- -0.0378 -- 0.178 3.46 -- -- -- --
52.49 0.339 2.85 0.0726 0.0872 -- -- -- 0.178 3.4 -- -- -- --
50.14 0.33 2.85 0.0329 -- -0.328 -- -- 0.182 -- 1.052 16 -- --
50.14 0.33 2.85 -- 0.0223 -0.336 -- -- 0.178 21.2 1.075 16 -- --
52.92 0.34 2.85 0.0763 -- -- -- -- 0.181 -- -- -- -- --
52.63 0.339 2.85 -- 0.0887 -- -- -- 0.17 3.4 -- -- -- --
50.17 0.33 2.85 -- -- -0.333 -- -- 0.178 -- 1.072 16 -- --
53.07 0.34 2.85 -- -- -- -- -- 0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.00 temperature 20.0 30 > th dose dependent rect. 2 1
2 42.02 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 42.03 wind 3.0 30 < th dose dependent rect. 2 1
5 42.04 atmosphere 1005.0 30 > th dose independent rect. 2 1
7 42.05 wind 3.0 30 < th dose independent rect. 2 1
8 42.05 temperature 20.0 30 > th dose independent rect. 2 1
13 42.07 humidity 80.0 30 > th dose independent rect. 2 1
17 42.09 humidity 50.0 30 > th dose dependent rect. 2 1
21 42.10 temperature 10.0 30 > th dose independent rect. 2 1
23 42.10 temperature 30.0 30 < th dose independent rect. 2 1
24 42.10 humidity 50.0 30 > th dose independent rect. 2 1
27 42.10 atmosphere 995.0 30 > th dose independent rect. 2 1
29 42.10 atmosphere 1010.0 30 < th dose independent rect. 2 1
31 42.10 radiation 1.0 30 < th dose independent rect. 2 1
36 42.10 precipitation 0.1 30 < th dose independent rect. 2 1
37 42.10 temperature 10.0 30 > th dose independent rect. 3 23
39 42.10 radiation 1.0 30 < th dose dependent rect. 2 1
44 42.10 precipitation 0.1 30 < th dose dependent rect. 2 1
48 42.24 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 42.26 wind 9.0 30 < th dose independent rect. 3 23
50 42.29 temperature 30.0 30 < th dose dependent rect. 2 1
56 42.49 wind 1.0 30 > th dose independent rect. 2 1
109 44.62 precipitation 0.1 30 < th dose independent rect. 3 23
110 44.62 precipitation 0.1 30 < th dose dependent rect. 3 23
112 44.97 atmosphere 995.0 30 > th dose independent rect. 3 23
123 45.93 wind 9.0 1440 < th dose independent rect. 23 1
124 45.93 temperature 10.0 1440 > th dose independent rect. 23 1
127 45.93 temperature 30.0 1440 < th dose independent rect. 23 1
131 45.93 humidity 50.0 1440 > th dose independent rect. 23 1
141 45.93 atmosphere 995.0 1440 > th dose independent rect. 23 1
142 45.93 radiation 1.0 1440 < th dose independent rect. 23 1
162 45.93 temperature 10.0 1440 > th dose independent rect. 24 23
165 45.93 radiation 1.0 1440 < th dose dependent rect. 23 1
172 46.00 wind 9.0 1440 < th dose independent rect. 3 1
173 46.00 temperature 10.0 1440 > th dose independent rect. 3 1
176 46.00 temperature 25.0 30 > th dose independent rect. 22 1
177 46.00 temperature 30.0 1440 < th dose independent rect. 3 1
181 46.00 humidity 50.0 1440 > th dose independent rect. 3 1
190 46.00 atmosphere 995.0 1440 > th dose independent rect. 3 1
191 46.00 radiation 1.0 1440 < th dose independent rect. 3 1
211 46.00 temperature 10.0 1440 > th dose independent rect. 4 23
214 46.00 radiation 1.0 1440 < th dose dependent rect. 3 1
234 46.02 humidity 90.0 30 < th dose independent rect. 22 1
235 46.05 atmosphere 1005.0 30 > th dose dependent rect. 22 1
236 46.06 temperature 20.0 30 > th dose dependent rect. 22 1
240 46.11 atmosphere 1005.0 30 > th dose independent rect. 22 1
248 46.18 precipitation 0.1 30 < th dose independent rect. 22 1
250 46.18 precipitation 0.1 30 < th dose dependent rect. 22 1
252 46.19 wind 3.0 30 < th dose independent rect. 22 1
253 46.20 humidity 80.0 30 > th dose independent rect. 22 1
257 46.23 wind 1.0 30 > th dose independent rect. 22 1
261 46.23 temperature 10.0 30 > th dose independent rect. 22 1
263 46.23 temperature 30.0 30 < th dose independent rect. 22 1
264 46.23 humidity 50.0 30 > th dose independent rect. 22 1
268 46.23 atmosphere 1010.0 30 < th dose independent rect. 22 1
270 46.23 radiation 1.0 30 < th dose independent rect. 22 1
275 46.23 temperature 10.0 30 > th dose independent rect. 23 23
276 46.23 wind 9.0 30 < th dose dependent rect. 22 1
277 46.23 radiation 1.0 30 < th dose dependent rect. 22 1
284 46.24 humidity 90.0 30 < th dose dependent rect. 22 1
287 46.30 humidity 50.0 30 > th dose dependent rect. 22 1
288 46.31 temperature 10.0 720 > th dose independent rect. 3 8
289 46.31 atmosphere 995.0 720 > th dose independent rect. 3 8
290 46.31 temperature 10.0 720 > th dose independent rect. 11 16
293 46.40 atmosphere 1015.0 720 < th dose independent rect. 3 8
295 46.41 wind 9.0 720 < th dose independent rect. 3 8
297 46.41 wind 1.0 30 > th dose dependent rect. 22 1
298 46.42 humidity 50.0 30 > th dose independent rect. 3 23
300 46.44 temperature 10.0 720 > th dose independent rect. 15 8
301 46.44 temperature 10.0 720 > th dose independent rect. 23 16
304 46.56 atmosphere 1015.0 30 < th dose dependent rect. 22 1
308 46.60 radiation 40.0 720 < th dose independent rect. 15 8
314 46.76 temperature 30.0 30 < th dose dependent rect. 22 1
320 46.85 wind 1.0 30 < th dose independent rect. 24 3
333 47.01 wind 9.0 30 < th dose independent rect. 23 23
341 47.18 wind 1.0 10 < th dose independent rect. 17 10
346 47.18 atmosphere 1015.0 30 < th dose independent rect. 3 23
354 47.21 humidity 50.0 720 > th dose independent rect. 3 8
397 47.55 wind 9.0 720 < th dose independent rect. 15 8
440 47.74 wind 9.0 720 < th dose independent rect. 23 16
454 47.89 precipitation 0.1 720 < th dose independent rect. 15 8
455 47.89 precipitation 0.1 720 < th dose dependent rect. 15 8
461 47.97 humidity 90.0 90 < th dose independent rect. 2 1
467 48.07 atmosphere 995.0 720 > th dose independent rect. 23 16
483 48.17 wind 9.0 720 < th dose independent rect. 11 16
493 48.29 precipitation 0.1 720 < th dose independent rect. 11 16
495 48.29 precipitation 0.1 720 < th dose dependent rect. 11 16
499 48.38 wind 1.0 10 > th dose independent rect. 23 23
506 48.48 atmosphere 1015.0 1440 < th dose independent rect. 3 1
508 48.48 wind 1.0 720 > th dose independent rect. 15 8
509 48.49 wind 1.0 30 > th dose dependent rect. 2 1
511 48.51 precipitation 0.1 720 < th dose independent rect. 3 8
512 48.51 precipitation 0.1 720 < th dose dependent rect. 3 8
524 48.64 wind 1.0 10 > th dose independent sin 15 NA
528 48.67 atmosphere 995.0 720 > th dose independent rect. 15 8
534 48.75 atmosphere 995.0 720 > th dose independent rect. 11 16
537 48.78 wind 1.0 30 < th dose dependent rect. 17 10
545 48.83 precipitation 0.1 720 < th dose independent rect. 23 16
548 48.83 precipitation 0.1 720 < th dose dependent rect. 23 16
622 49.20 radiation 10.0 30 < th dose dependent rect. 3 23
628 49.23 temperature 30.0 30 < th dose independent rect. 3 23
637 49.26 radiation 40.0 10 < th dose dependent rect. 3 23
642 49.28 wind 9.0 30 < th dose dependent rect. 3 23
654 49.35 temperature 10.0 720 > th dose independent rect. 7 8
655 49.35 atmosphere 1015.0 720 < th dose independent rect. 7 8
656 49.35 temperature 10.0 720 > th dose independent rect. 15 16
659 49.39 wind 9.0 720 < th dose independent rect. 19 8
661 49.39 radiation 1.0 720 < th dose dependent rect. 19 8
664 49.40 temperature 10.0 720 > th dose independent rect. 19 8
665 49.40 temperature 30.0 720 < th dose independent rect. 19 8
666 49.40 humidity 50.0 720 > th dose independent rect. 19 8
667 49.40 atmosphere 995.0 720 > th dose independent rect. 19 8
668 49.40 radiation 1.0 720 < th dose independent rect. 19 8
673 49.40 temperature 10.0 720 > th dose independent rect. 3 16
680 49.41 temperature 10.0 30 > th dose dependent rect. 3 23
685 49.42 wind 1.0 30 < th dose dependent rect. 11 16
701 49.52 humidity 90.0 10 > th dose independent rect. 24 3
702 49.52 precipitation 0.1 720 < th dose independent rect. 19 8
704 49.52 precipitation 0.1 720 < th dose dependent rect. 19 8
715 49.61 radiation 40.0 30 < th dose independent rect. 3 23
718 49.63 precipitation 0.1 720 < th dose independent rect. 7 8
719 49.63 precipitation 0.1 720 < th dose dependent rect. 7 8
720 49.64 radiation 40.0 720 < th dose independent rect. 15 16
725 49.65 humidity 50.0 720 > th dose independent rect. 23 16
726 49.65 atmosphere 1015.0 720 < th dose independent rect. 3 16
728 49.65 wind 1.0 30 > th dose independent rect. 3 23
733 49.67 wind 1.0 10 < th dose independent sin 15 NA
737 49.68 temperature 25.0 270 > th dose independent rect. 22 5
749 49.73 wind 1.0 10 > th dose independent rect. 14 16
773 49.84 atmosphere 995.0 720 > th dose independent rect. 7 8
781 49.86 wind 1.0 10 > th dose independent rect. 16 14
786 49.87 humidity 50.0 30 > th dose dependent rect. 3 23
796 49.90 wind 1.0 10 > th dose independent rect. 12 23
834 49.99 precipitation 0.1 720 < th dose independent rect. 15 16
837 49.99 precipitation 0.1 720 < th dose dependent rect. 15 16
841 50.01 wind 1.0 10 > th dose independent rect. 23 10
871 50.03 wind 1.0 10 > th dose independent rect. 23 12
873 50.05 wind 1.0 10 > th dose independent rect. 12 18
881 50.06 atmosphere 995.0 30 > th dose dependent rect. 3 23
897 50.12 atmosphere 995.0 720 > th dose independent rect. 15 16
898 50.12 wind 1.0 10 > th dose independent rect. 12 21
900 50.13 wind 9.0 720 < th dose independent rect. 15 16
904 50.14 wind 1.0 10 > th dose independent rect. 18 12
915 50.17 wind 9.0 720 < th dose independent rect. 7 8
916 50.17 wind 1.0 10 > th dose independent rect. 14 19
918 50.18 temperature 25.0 270 > th dose independent rect. 22 8
922 50.19 atmosphere 995.0 720 > th dose independent rect. 3 16
923 50.19 atmosphere 1015.0 720 < th dose independent rect. 23 16
932 50.21 radiation 10.0 10 < th dose independent rect. 3 23
938 50.21 wind 9.0 30 < th dose dependent rect. 11 16
978 50.29 wind 1.0 10 > th dose independent rect. 14 21
981 50.29 atmosphere 995.0 30 > th dose independent rect. 23 23