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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0106900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0505) R2 : 0.0575
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.14 (0.22) R2dE : 0.0557 R2E : 0.0544
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.116 (0.106) R2dN8 : 0.00316 R2N8 : 0.00183
σ : 0.948
deviance : 414.62
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 5.566
memory length : 4602
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
406.53 0.947 3.49 0.156 0.112 1.66 -0.756 2.73 -0.192 0.839 5.1 4552 -- --
410.52 0.944 3.42 0.154 0.109 1.25 -0.707 -- -0.1 1.04 5.56 4602 -- --
408.81 0.942 3.49 0.188 0.108 1.69 -- 2.83 -0.21 1.94 5.099 4552 -- --
413.27 0.947 3.42 0.189 0.102 1.24 -- -- -0.105 1.65 5.554 4602 -- --
409.74 0.943 3.49 0.194 -- 1.68 -- 2.84 -0.188 -- 5.077 4554 -- --
433.82 0.976 3.43 -0.305 0.0286 -- -0.873 -- -0.136 0.355 -- -- -- --
437.11 0.979 3.42 -0.271 0.0318 -- -- -- -0.132 0.917 -- -- -- --
414 0.948 3.42 0.169 -- 1.22 -- -- -0.098 -- 5.515 4602 -- --
413.9 0.948 3.42 -- 0.108 1.16 -- -- -0.116 1.78 5.5 4588 -- --
437.17 0.977 3.42 -0.27 -- -- -- -- -0.131 -- -- -- -- --
439.05 0.98 3.42 -- 0.0276 -- -- -- -0.101 0.49 -- -- -- --
414.62 0.948 3.42 -- -- 1.14 -- -- -0.116 -- 5.566 4602 -- --
439.09 0.978 3.42 -- -- -- -- -- -0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 399.71 humidity 60 43200 < th dose independent rect. 11 1
3 403.51 wind 3 10 > th dose independent rect. 10 1
4 403.77 wind 5 4320 > th dose independent rect. 19 6
5 403.88 wind 5 4320 < th dose independent rect. 19 6
7 404.45 humidity 70 10 > th dose independent rect. 24 9
8 404.50 radiation 30 10 < th dose independent rect. 24 9
12 404.83 humidity 60 43200 > th dose independent rect. 10 2
21 405.19 humidity 60 43200 < th dose independent rect. 6 7
58 405.90 wind 1 10 > th dose dependent rect. 9 2
63 406.00 radiation 1 4320 < th dose dependent rect. 2 3
65 406.17 radiation 1 4320 < th dose dependent rect. 4 1
66 406.25 radiation 10 43200 < th dose independent rect. 5 2
70 406.30 radiation 10 43200 < th dose independent rect. 1 6
75 406.31 radiation 10 43200 < th dose independent rect. 21 10
83 406.50 humidity 70 43200 > th dose independent rect. 19 14
84 406.50 humidity 70 43200 < th dose dependent rect. 7 4
96 406.60 temperature 20 4320 > th dose independent rect. 21 3
105 406.83 wind 3 30 > th dose independent rect. 7 4
108 406.93 wind 3 4320 > th dose dependent rect. 17 8
111 407.01 humidity 60 43200 < th dose independent sin 8 NA
112 407.05 temperature 20 4320 < th dose independent rect. 21 3
132 407.24 humidity 70 43200 < th dose independent rect. 19 14
133 407.25 wind 3 4320 > th dose dependent rect. 19 6
150 407.67 wind 5 4320 < th dose independent sin 13 NA
153 407.71 temperature 20 4320 < th dose independent rect. 20 5
161 407.90 wind 5 4320 > th dose independent rect. 19 21
163 407.98 wind 5 4320 > th dose independent sin 13 NA
168 408.06 wind 5 4320 > th dose independent rect. 17 22
171 408.12 radiation 20 43200 < th dose independent rect. 16 3
179 408.13 temperature 30 30 < th dose independent rect. 9 15
180 408.13 radiation 1 43200 > th dose dependent rect. 4 2
190 408.14 radiation 20 43200 < th dose independent rect. 16 11
215 408.33 wind 7 14400 > th dose independent rect. 6 4
216 408.33 temperature 25 4320 > th dose independent rect. 4 5
225 408.44 wind 5 4320 < th dose independent rect. 19 21
226 408.44 wind 5 4320 < th dose independent rect. 17 22
239 408.55 temperature 25 4320 > th dose independent rect. 5 3
242 408.57 temperature 25 4320 < th dose independent rect. 4 5
256 408.68 temperature 25 4320 < th dose independent rect. 6 2
271 408.83 radiation 1 90 < th dose independent rect. 9 2
274 408.83 radiation 1 90 < th dose dependent rect. 9 2
283 408.90 wind 7 14400 < th dose independent rect. 6 4
287 408.92 wind 5 4320 > th dose independent rect. 6 21
296 409.00 wind 7 43200 > th dose dependent rect. 14 1
298 409.03 wind 5 1440 < th dose dependent rect. 23 6
299 409.03 radiation 20 43200 > th dose dependent rect. 16 16
306 409.10 wind 9 43200 < th dose independent rect. 14 1
309 409.12 humidity 60 43200 > th dose independent sin 9 NA
316 409.13 temperature 25 90 < th dose dependent rect. 6 1
340 409.28 temperature 25 30 < th dose independent rect. 14 20
348 409.32 wind 5 4320 < th dose independent rect. 6 21
354 409.36 temperature 25 90 < th dose independent rect. 6 19
379 409.47 wind 1 43200 < th dose dependent rect. 23 5
410 409.58 wind 1 1440 > th dose dependent rect. 23 6
446 409.76 wind 7 43200 > th dose independent rect. 13 2
451 409.77 temperature 25 4320 > th dose dependent rect. 18 16
497 409.89 wind 5 4320 > th dose independent no NA NA
501 409.90 wind 5 4320 > th dose independent rect. 2 23
518 409.97 temperature 20 4320 > th dose independent rect. 20 9
526 410.00 wind 3 4320 > th dose dependent sin 14 NA
532 410.01 temperature 25 4320 > th dose dependent rect. 23 10
551 410.05 temperature 20 4320 < th dose independent rect. 20 9
584 410.10 radiation 30 43200 > th dose dependent rect. 15 1
606 410.17 wind 5 4320 > th dose independent rect. 12 23
611 410.19 wind 1 43200 < th dose dependent rect. 1 2
622 410.22 atmosphere 995 43200 < th dose dependent rect. 10 9
625 410.23 wind 5 4320 < th dose independent no NA NA
640 410.28 wind 9 43200 > th dose independent rect. 10 7
664 410.30 temperature 25 90 < th dose dependent rect. 6 3
672 410.33 wind 9 43200 > th dose independent rect. 10 5
687 410.35 temperature 25 4320 > th dose independent rect. 18 15
690 410.35 temperature 25 4320 > th dose dependent rect. 4 5
693 410.36 wind 5 1440 < th dose independent rect. 17 17
709 410.42 wind 5 4320 > th dose independent rect. 24 23
715 410.43 temperature 25 30 > th dose independent rect. 11 22
718 410.43 wind 5 4320 > th dose dependent rect. 11 14
724 410.46 temperature 25 4320 > th dose dependent rect. 8 1
731 410.50 wind 5 4320 < th dose independent rect. 12 23
733 410.51 wind 9 43200 < th dose independent rect. 10 5
748 410.54 radiation 40 43200 < th dose independent rect. 15 19
756 410.56 temperature 20 4320 > th dose independent rect. 4 1
763 410.57 wind 9 90 > th dose dependent rect. 22 12
784 410.59 temperature 20 4320 < th dose independent rect. 4 1
791 410.60 temperature 25 4320 < th dose independent rect. 18 15
805 410.63 radiation 40 43200 < th dose dependent rect. 1 5
808 410.64 wind 5 1440 > th dose independent rect. 17 17
814 410.64 wind 5 4320 > th dose dependent rect. 6 19
831 410.67 radiation 10 43200 < th dose dependent rect. 21 9
847 410.69 wind 5 4320 > th dose dependent rect. 8 17
862 410.72 temperature 20 4320 > th dose dependent rect. 3 1
879 410.76 radiation 40 43200 < th dose dependent rect. 4 2
913 410.82 wind 7 1440 < th dose dependent rect. 17 12
921 410.83 temperature 20 14400 < th dose dependent rect. 23 1
950 410.87 wind 5 4320 < th dose independent rect. 23 23
957 410.88 radiation 40 43200 < th dose dependent rect. 21 9
958 410.88 radiation 40 10 < th dose dependent rect. 24 9