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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0105900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0407) R2 : 0.000611
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0452 (0.0857) R2dN8 : 0.000789 R2N8 : 0.000611
σ : 0.767
deviance : 269.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
249.11 0.742 2.98 0.213 0.308 -0.194 0.501 3.1 0.0706 8.21 3.587 997 -- --
259.95 0.757 3.04 0.18 0.203 0.159 1.15 -- 0.0782 9.1 3.587 997 -- --
249.69 0.736 2.98 0.237 0.329 -0.263 -- 3.38 0.0644 8.54 3.624 974 -- --
264.22 0.757 3.04 0.206 0.152 0.194 -- -- 0.093 8.66 2.184 621 -- --
254.63 0.743 2.99 0.186 -- -0.018 -- 3.06 0.0986 -- 3.638 994 -- --
260.61 0.757 3.04 0.224 0.231 -- 1.17 -- 0.0722 8.55 -- -- -- --
264.84 0.762 3.04 0.259 0.24 -- -- -- 0.0708 7.68 -- -- -- --
264.94 0.758 3.04 0.161 -- 0.346 -- -- 0.11 -- 2.885 621 -- --
265.06 0.758 3.04 -- 0.145 0.284 -- -- 0.0772 7.84 2.243 622 -- --
267.93 0.765 3.05 0.262 -- -- -- -- 0.0743 -- -- -- -- --
266.6 0.764 3.05 -- 0.242 -- -- -- 0.042 7.6 -- -- -- --
265.65 0.759 3.04 -- -- 0.39 -- -- 0.106 -- 2.865 621 -- --
269.74 0.767 3.06 -- -- -- -- -- 0.0452 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.78 wind 1.0 90 < th dose independent rect. 7 6
2 244.12 wind 3.0 90 < th dose dependent rect. 7 9
5 244.45 radiation 1.0 720 < th dose dependent rect. 5 1
7 244.50 wind 3.0 90 < th dose dependent rect. 7 12
8 244.53 wind 1.0 90 < th dose dependent rect. 7 6
13 245.12 wind 3.0 90 < th dose dependent rect. 7 14
18 245.35 humidity 90.0 90 > th dose dependent rect. 6 16
33 245.94 wind 3.0 30 < th dose dependent rect. 7 16
37 246.15 temperature 25.0 1440 > th dose independent rect. 1 1
42 246.32 wind 3.0 30 < th dose independent rect. 7 16
46 246.36 wind 3.0 30 < th dose independent rect. 7 9
53 246.66 radiation 10.0 720 < th dose independent rect. 5 3
61 246.83 temperature 15.0 30 > th dose independent rect. 3 23
64 246.91 humidity 90.0 270 > th dose independent rect. 7 1
66 246.99 wind 1.0 4320 < th dose dependent rect. 3 4
67 246.99 radiation 10.0 270 < th dose dependent rect. 4 22
76 247.22 wind 1.0 4320 > th dose independent rect. 5 1
81 247.26 wind 1.0 4320 < th dose independent rect. 5 1
89 247.33 humidity 90.0 14400 > th dose dependent rect. 6 1
93 247.38 wind 1.0 4320 < th dose independent rect. 3 3
97 247.44 wind 1.0 4320 > th dose independent rect. 3 3
99 247.45 wind 3.0 43200 < th dose dependent rect. 22 1
104 247.54 humidity 90.0 270 > th dose independent rect. 6 15
128 247.71 wind 3.0 1440 < th dose dependent rect. 11 1
130 247.75 radiation 10.0 720 < th dose independent rect. 23 9
131 247.75 wind 3.0 270 < th dose dependent sin 23 NA
132 247.77 temperature 25.0 720 > th dose independent rect. 24 7
135 247.79 temperature 25.0 90 > th dose dependent rect. 1 5
138 247.80 temperature 25.0 10 < th dose independent rect. 6 21
139 247.82 wind 1.0 10 < th dose independent rect. 14 8
152 247.91 humidity 80.0 10 > th dose independent rect. 8 1
155 247.93 radiation 10.0 90 < th dose independent rect. 7 1
160 247.98 temperature 25.0 1440 < th dose dependent rect. 8 1
169 248.08 radiation 1.0 14400 > th dose independent rect. 18 11
170 248.08 temperature 25.0 10 < th dose independent rect. 7 16
174 248.09 humidity 90.0 14400 > th dose dependent rect. 5 10
183 248.14 temperature 25.0 720 > th dose dependent rect. 1 1
188 248.18 radiation 1.0 1440 < th dose dependent rect. 20 11
190 248.19 humidity 90.0 14400 > th dose dependent rect. 5 8
192 248.19 radiation 1.0 1440 < th dose dependent rect. 22 9
200 248.23 radiation 1.0 1440 < th dose dependent rect. 2 5
201 248.24 wind 1.0 43200 > th dose independent rect. 18 1
205 248.26 radiation 10.0 720 < th dose independent rect. 21 11
206 248.26 radiation 10.0 4320 > th dose independent rect. 17 14
209 248.27 humidity 80.0 270 > th dose dependent rect. 7 1
219 248.31 humidity 90.0 14400 > th dose dependent rect. 5 3
228 248.35 temperature 15.0 30 > th dose independent rect. 7 19
233 248.36 radiation 10.0 720 < th dose independent rect. 1 7
240 248.41 humidity 90.0 90 > th dose dependent rect. 6 10
242 248.42 wind 1.0 10 < th dose dependent rect. 14 8
243 248.43 radiation 1.0 14400 > th dose independent rect. 18 1
259 248.47 precipitation 0.1 1440 > th dose independent rect. 8 5
260 248.47 temperature 25.0 90 < th dose independent rect. 6 16
261 248.47 precipitation 0.1 1440 > th dose dependent rect. 8 5
262 248.47 wind 3.0 720 < th dose dependent rect. 20 20
264 248.50 radiation 1.0 4320 < th dose independent rect. 18 14
271 248.52 radiation 1.0 1440 < th dose dependent rect. 18 17
274 248.54 radiation 1.0 1440 < th dose dependent rect. 5 6
276 248.55 wind 1.0 720 < th dose independent rect. 4 21
279 248.55 radiation 1.0 1440 < th dose dependent rect. 20 15
284 248.56 radiation 1.0 1440 < th dose dependent rect. 22 13
291 248.58 radiation 1.0 1440 < th dose dependent sin 8 NA
293 248.58 radiation 40.0 14400 < th dose dependent rect. 18 10
304 248.60 radiation 1.0 1440 < th dose dependent rect. 3 8
317 248.61 radiation 1.0 1440 < th dose dependent rect. 24 11
323 248.63 temperature 15.0 1440 > th dose dependent rect. 8 1
343 248.65 temperature 15.0 1440 > th dose independent rect. 4 16
350 248.65 wind 3.0 720 < th dose dependent rect. 3 23
352 248.66 temperature 25.0 90 < th dose independent rect. 6 10
393 248.73 humidity 50.0 43200 > th dose dependent rect. 6 1
407 248.75 wind 3.0 1440 < th dose dependent rect. 5 7
423 248.79 radiation 20.0 4320 > th dose independent rect. 16 16
427 248.81 wind 1.0 43200 < th dose independent rect. 18 1
432 248.81 radiation 20.0 270 < th dose dependent rect. 7 1
453 248.86 precipitation 0.1 1440 > th dose independent rect. 8 3
456 248.86 wind 1.0 1440 > th dose independent rect. 4 8
457 248.86 precipitation 0.1 1440 > th dose dependent rect. 8 3
466 248.87 radiation 1.0 4320 < th dose independent rect. 20 12
481 248.89 radiation 1.0 4320 < th dose independent rect. 2 6
483 248.89 radiation 1.0 4320 < th dose independent rect. 22 10
490 248.90 radiation 10.0 14400 < th dose dependent rect. 18 5
500 248.91 radiation 1.0 4320 > th dose independent rect. 4 4
536 248.95 radiation 1.0 4320 < th dose independent rect. 17 19
547 248.96 radiation 1.0 14400 < th dose independent rect. 18 10
549 248.96 radiation 10.0 14400 < th dose dependent rect. 18 1
555 248.97 radiation 1.0 14400 < th dose independent rect. 18 5
563 248.98 radiation 10.0 14400 < th dose dependent rect. 18 3
575 249.00 radiation 1.0 14400 < th dose independent rect. 18 1
577 249.00 radiation 1.0 14400 < th dose independent rect. 18 3
623 249.09 temperature 20.0 720 > th dose dependent rect. 3 8
624 249.10 radiation 1.0 4320 > th dose independent rect. 18 18
629 249.10 temperature 30.0 90 < th dose dependent rect. 6 10
644 249.12 temperature 25.0 270 > th dose dependent rect. 24 7
666 249.16 radiation 1.0 4320 < th dose independent sin 10 NA
667 249.16 wind 1.0 1440 < th dose independent rect. 4 8
690 249.18 wind 1.0 14400 < th dose dependent rect. 22 7
697 249.19 temperature 25.0 10 < th dose independent rect. 6 11
702 249.19 radiation 10.0 270 < th dose independent rect. 4 22
725 249.21 humidity 90.0 90 > th dose dependent rect. 6 13
790 249.28 wind 7.0 43200 > th dose independent rect. 18 1
799 249.30 radiation 1.0 4320 > th dose independent sin 9 NA
800 249.30 atmosphere 1005.0 43200 > th dose independent rect. 15 2
818 249.32 temperature 25.0 10 > th dose independent rect. 24 21
821 249.33 humidity 90.0 43200 < th dose independent rect. 4 2
837 249.35 temperature 15.0 1440 > th dose independent rect. 4 18
853 249.37 atmosphere 1005.0 43200 > th dose independent rect. 15 7
856 249.37 humidity 90.0 1440 > th dose dependent rect. 6 9
877 249.40 atmosphere 1005.0 43200 < th dose independent rect. 15 1
884 249.40 wind 1.0 1440 < th dose dependent rect. 4 12
886 249.40 wind 1.0 14400 < th dose dependent rect. 12 17
899 249.41 temperature 10.0 720 > th dose dependent rect. 3 8
901 249.41 temperature 30.0 720 < th dose dependent rect. 4 9
903 249.42 wind 1.0 10 < th dose independent rect. 21 1
916 249.42 wind 1.0 10 < th dose dependent rect. 21 1
924 249.42 radiation 1.0 43200 < th dose dependent rect. 22 7
935 249.43 wind 1.0 14400 > th dose independent rect. 10 13
946 249.44 atmosphere 1005.0 43200 < th dose independent rect. 15 7
947 249.44 temperature 25.0 720 < th dose independent rect. 23 9
998 249.47 wind 3.0 1440 < th dose independent rect. 11 1