Os10g0101900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0101900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 305.74 | 0.822 | 6.28 | -2.99 | 0.907 | -0.796 | 3.1 | -4.65 | 0.754 | 23.1 | 30.02 | 1518 | -- | -- |
| 306.25 | 0.815 | 6.13 | -2.12 | 0.959 | -1.49 | 3.05 | -- | 0.967 | 23 | 29.52 | 3199 | -- | -- |
| 345.48 | 0.866 | 6.26 | -2.99 | 0.903 | -0.932 | -- | -4.26 | 0.762 | 22.6 | 30.1 | 1631 | -- | -- |
| 346.28 | 0.867 | 6.13 | -2.2 | 0.967 | -1.46 | -- | -- | 1.03 | 22.8 | 29.2 | 3190 | -- | -- |
| 394.51 | 0.925 | 6.26 | -3.12 | -- | -0.732 | -- | -4.9 | 0.77 | -- | 30.04 | 1593 | -- | -- |
| 382.46 | 0.917 | 6.13 | -2.51 | 0.843 | -- | 2.98 | -- | 1 | 22.8 | -- | -- | -- | -- |
| 419.52 | 0.959 | 6.13 | -2.63 | 0.834 | -- | -- | -- | 0.995 | 22.5 | -- | -- | -- | -- |
| 400.23 | 0.932 | 6.13 | -2.24 | -- | -1.34 | -- | -- | 0.93 | -- | 29.64 | 3182 | -- | -- |
| 456.04 | 0.995 | 6.04 | -- | 0.93 | -2.05 | -- | -- | 1.37 | 22.6 | 27.4 | 4265 | -- | -- |
| 462.19 | 1 | 6.11 | -2.61 | -- | -- | -- | -- | 0.999 | -- | -- | -- | -- | -- |
| 601.21 | 1.15 | 6.07 | -- | 0.818 | -- | -- | -- | 1.29 | 22.3 | -- | -- | -- | -- |
| 505.15 | 1.05 | 6.01 | -- | -- | -2.05 | -- | -- | 1.42 | -- | 27.4 | 4425 | -- | -- |
| 641.98 | 1.18 | 6.05 | -- | -- | -- | -- | -- | 1.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 290.97 | radiation | 40 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 2 | 291.39 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 38 | 294.09 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 41 | 294.11 | radiation | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 47 | 294.15 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 8 |
| 48 | 294.15 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 54 | 294.24 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 126 | 297.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 149 | 298.76 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 165 | 299.31 | radiation | 30 | 4320 | > th | dose independent | sin | 11 | NA |
| 168 | 299.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 190 | 300.12 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 194 | 300.31 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 196 | 300.39 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 199 | 300.41 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 212 | 300.73 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 226 | 301.08 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 245 | 301.61 | humidity | 70 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 246 | 301.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 263 | 301.67 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 281 | 301.75 | radiation | 40 | 1440 | < th | dose dependent | rect. | 19 | 12 |
| 312 | 302.02 | radiation | 30 | 4320 | < th | dose independent | sin | 11 | NA |
| 324 | 302.30 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 335 | 302.31 | radiation | 40 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 343 | 302.34 | radiation | 40 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 350 | 302.39 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 354 | 302.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 384 | 302.57 | humidity | 70 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 390 | 302.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 391 | 302.61 | temperature | 20 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 415 | 302.87 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 425 | 302.94 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 515 | 303.14 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 549 | 303.31 | radiation | 30 | 4320 | > th | dose dependent | sin | 11 | NA |
| 554 | 303.36 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 556 | 303.38 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 571 | 303.48 | radiation | 40 | 4320 | < th | dose dependent | rect. | 4 | 6 |
| 576 | 303.49 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 8 |
| 589 | 303.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 608 | 303.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 637 | 303.74 | temperature | 20 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 677 | 303.92 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 691 | 304.00 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 703 | 304.06 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 714 | 304.10 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 761 | 304.22 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 869 | 304.63 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 969 | 304.91 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 973 | 304.92 | temperature | 30 | 1440 | < th | dose independent | sin | 2 | NA |
| 977 | 304.93 | temperature | 30 | 1440 | > th | dose independent | sin | 2 | NA |