Os10g0100500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os10g0100500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.94 | 0.415 | 9.81 | 0.67 | 0.475 | -1.09 | 1.3 | 5.35 | 0.47 | 21.1 | 27.3 | 5788 | -- | -- |
| 89.86 | 0.441 | 9.89 | 0.161 | 0.382 | -1.29 | 1.5 | -- | 0.56 | 21.6 | 21.05 | 23516 | -- | -- |
| 82.94 | 0.424 | 9.8 | 0.668 | 0.498 | -1.07 | -- | 5.46 | 0.485 | 20.1 | 27.4 | 5803 | -- | -- |
| 92.23 | 0.447 | 9.93 | 0.0038 | 0.507 | -1.23 | -- | -- | 0.395 | 20.5 | 21 | 23520 | -- | -- |
| 96.53 | 0.458 | 9.79 | 0.689 | -- | -1.08 | -- | 5.55 | 0.486 | -- | 27.4 | 5788 | -- | -- |
| 110.55 | 0.493 | 10.1 | -1.22 | 0.474 | -- | 1.22 | -- | -0.123 | 21 | -- | -- | -- | -- |
| 115.03 | 0.502 | 10.1 | -1.26 | 0.493 | -- | -- | -- | -0.121 | 20.2 | -- | -- | -- | -- |
| 106.16 | 0.48 | 9.93 | -0.102 | -- | -1.16 | -- | -- | 0.344 | -- | 21.3 | 22896 | -- | -- |
| 92.2 | 0.447 | 9.93 | -- | 0.508 | -1.21 | -- | -- | 0.387 | 20.4 | 21 | 23520 | -- | -- |
| 128.42 | 0.53 | 10 | -1.26 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 156.55 | 0.585 | 10 | -- | 0.501 | -- | -- | -- | 0.0191 | 20 | -- | -- | -- | -- |
| 106.18 | 0.48 | 9.93 | -- | -- | -1.26 | -- | -- | 0.338 | -- | 19.78 | 24414 | -- | -- |
| 170.24 | 0.609 | 10 | -- | -- | -- | -- | -- | 0.0132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 4 | 75.20 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 18 |
| 5 | 75.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 6 | 75.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 9 | 75.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 12 | 75.41 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 20 |
| 19 | 75.46 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 32 | 75.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 35 | 75.58 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 43 | 75.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 45 | 75.67 | humidity | 90 | 43200 | > th | dose independent | sin | 14 | NA |
| 72 | 75.81 | humidity | 90 | 43200 | > th | dose dependent | sin | 13 | NA |
| 88 | 75.91 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 142 | 76.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 147 | 76.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 152 | 76.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 11 |
| 157 | 76.35 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 180 | 76.45 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 183 | 76.46 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 21 |
| 189 | 76.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 205 | 76.58 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 244 | 76.77 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 276 | 76.86 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 310 | 77.01 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 318 | 77.03 | radiation | 40 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 326 | 77.05 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 333 | 77.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 345 | 77.11 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 348 | 77.12 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 349 | 77.13 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 381 | 77.23 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 411 | 77.35 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 414 | 77.36 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 433 | 77.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 438 | 77.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 440 | 77.42 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 461 | 77.46 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 517 | 77.63 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 540 | 77.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 551 | 77.72 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 552 | 77.72 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 581 | 77.78 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 588 | 77.80 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 593 | 77.81 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 625 | 77.89 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 626 | 77.89 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 631 | 77.90 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 636 | 77.91 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 702 | 78.07 | temperature | 15 | 43200 | < th | dose dependent | sin | 11 | NA |
| 748 | 78.18 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 759 | 78.20 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 760 | 78.20 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 783 | 78.25 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 784 | 78.25 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 785 | 78.25 | radiation | 10 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 799 | 78.27 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 813 | 78.31 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 828 | 78.34 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 847 | 78.38 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 862 | 78.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 864 | 78.41 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 928 | 78.53 | radiation | 40 | 43200 | < th | dose dependent | rect. | 5 | 1 |