Os09g0573000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0573000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein prenyltransferase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.35 | 0.574 | 8.26 | 1.66 | 1.65 | -1.24 | -1.05 | -4.01 | 0.26 | 22.9 | 23.36 | 698 | -- | -- |
| 167.21 | 0.602 | 8.34 | 1.13 | 1.68 | -0.645 | -0.302 | -- | 0.146 | 22.8 | 24.87 | 726 | -- | -- |
| 153.39 | 0.577 | 8.27 | 1.63 | 1.66 | -1.18 | -- | -3.44 | 0.258 | 22.8 | 23.26 | 676 | -- | -- |
| 167.56 | 0.603 | 8.34 | 1.15 | 1.68 | -0.643 | -- | -- | 0.148 | 22.8 | 24.9 | 730 | -- | -- |
| 301.72 | 0.809 | 8.25 | 1.61 | -- | -1.81 | -- | -3.67 | 0.133 | -- | 28.8 | 787 | -- | -- |
| 173.25 | 0.617 | 8.31 | 1.31 | 1.77 | -- | -0.316 | -- | 0.281 | 22.8 | -- | -- | -- | -- |
| 173.66 | 0.617 | 8.31 | 1.33 | 1.77 | -- | -- | -- | 0.282 | 22.8 | -- | -- | -- | -- |
| 314.94 | 0.827 | 8.33 | 0.892 | -- | -1.82 | -- | -- | 0.0128 | -- | 45.35 | 771 | -- | -- |
| 199.09 | 0.657 | 8.41 | -- | 1.64 | -0.983 | -- | -- | -0.0329 | 23 | 25.09 | 721 | -- | -- |
| 367.02 | 0.895 | 8.26 | 1.36 | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
| 220.02 | 0.694 | 8.34 | -- | 1.78 | -- | -- | -- | 0.134 | 22.8 | -- | -- | -- | -- |
| 333.73 | 0.851 | 8.36 | -- | -- | -2.16 | -- | -- | -0.13 | -- | 46.27 | 784 | -- | -- |
| 415.94 | 0.952 | 8.3 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.07 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 4 | 140.64 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 5 | 141.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 8 | 141.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 11 | 141.82 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 16 | 142.49 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 17 | 142.58 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 21 | 142.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 44 | 143.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 57 | 144.26 | temperature | 25.0 | 720 | < th | dose independent | rect. | 24 | 11 |
| 88 | 144.91 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 125 | 145.51 | temperature | 15.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 152 | 145.93 | temperature | 25.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 155 | 145.99 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 167 | 146.12 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 177 | 146.19 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 228 | 146.83 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 238 | 146.88 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 256 | 147.03 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 266 | 147.11 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 17 |
| 267 | 147.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 277 | 147.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 280 | 147.22 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 305 | 147.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 318 | 147.51 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 342 | 147.66 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 371 | 147.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 374 | 147.93 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 376 | 147.95 | humidity | 80.0 | 30 | < th | dose independent | rect. | 9 | 5 |
| 380 | 147.97 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 15 |
| 388 | 148.04 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 393 | 148.09 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 395 | 148.10 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 15 |
| 397 | 148.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 408 | 148.14 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 444 | 148.34 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 457 | 148.38 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 468 | 148.44 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 471 | 148.45 | humidity | 80.0 | 10 | > th | dose independent | sin | 2 | NA |
| 513 | 148.68 | temperature | 25.0 | 720 | > th | dose independent | rect. | 2 | 9 |
| 514 | 148.68 | temperature | 25.0 | 720 | > th | dose independent | rect. | 24 | 11 |
| 521 | 148.71 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 541 | 148.75 | humidity | 70.0 | 30 | > th | dose dependent | sin | 3 | NA |
| 547 | 148.79 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 559 | 148.88 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 13 |
| 568 | 148.92 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 9 |
| 581 | 148.97 | temperature | 25.0 | 720 | > th | dose independent | rect. | 24 | 13 |
| 599 | 149.03 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 601 | 149.03 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 20 | 17 |
| 606 | 149.07 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 607 | 149.08 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 612 | 149.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 5 |
| 613 | 149.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 622 | 149.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 634 | 149.19 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 650 | 149.26 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 653 | 149.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 654 | 149.27 | humidity | 80.0 | 10 | < th | dose independent | sin | 3 | NA |
| 657 | 149.28 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 687 | 149.41 | temperature | 25.0 | 720 | < th | dose independent | sin | 6 | NA |
| 710 | 149.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 712 | 149.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 727 | 149.52 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 18 |
| 742 | 149.59 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 743 | 149.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 749 | 149.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 751 | 149.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 752 | 149.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 754 | 149.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 755 | 149.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 764 | 149.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 771 | 149.64 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 778 | 149.65 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 14 |
| 784 | 149.67 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 790 | 149.69 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 801 | 149.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 23 |
| 838 | 149.82 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 856 | 149.88 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 857 | 149.88 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 904 | 150.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 929 | 150.08 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 931 | 150.09 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 948 | 150.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 982 | 150.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 984 | 150.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 19 |
| 985 | 150.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 988 | 150.20 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 991 | 150.20 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 996 | 150.22 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 998 | 150.23 | temperature | 25.0 | 270 | > th | dose independent | rect. | 3 | 15 |