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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0570800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Isopenicillin N synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0335) R2 : 0.294
β1 : 0.0298 (0.122) R2dD : 0.000192 R2D : -0.00128
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.36 (0.206) R2dE : 0.0767 R2E : 0.138
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.09 (0.854) R2dD*E : 0.156 R2D*E : 0.219
γ1 : 0.0289 (0.0725) R2dN8 : 0.00062 R2N8 : -0.00285
σ : 0.623
deviance : 178.84
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_____
C
peak time of C : --
E
wheather : wind
threshold : 4.6
memory length : 627
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.3
open length of G : 1.23

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.68 0.614 3.19 0.0273 0.361 1.03 0.926 -9.21 0.0273 4.62 4.61 628 21.3 1.23
212.78 0.679 3.19 -0.108 0.369 1.8 0.566 -- 0.0148 4.14 4.874 684 21.2 2.12
172.62 0.612 3.19 0.0283 0.365 1.04 -- -8.47 0.0256 4.6 4.613 627 21.3 1.24
199.82 0.658 3.19 -0.0111 0.367 2.11 -- -- 0.00189 3.56 5.3 679 20.8 2.6
178.84 0.623 3.2 0.0298 -- 1.36 -- -8.09 0.0289 -- 4.6 627 21.3 1.23
232.17 0.714 3.25 -0.102 0.567 -- -0.95 -- -0.139 3.7 -- -- -- --
234.84 0.718 3.25 -0.0869 0.565 -- -- -- -0.134 3.89 -- -- -- --
201.85 0.662 3.19 0.213 -- 2.48 -- -- 0.00539 -- 5.2 649 20.9 1.02
198.41 0.656 3.22 -- 0.344 2.42 -- -- 0.000543 3.99 5.4 671 20.8 2.58
252.37 0.742 3.25 -0.0636 -- -- -- -- -0.119 -- -- -- -- --
235.04 0.717 3.25 -- 0.563 -- -- -- -0.124 3.89 -- -- -- --
197.41 0.654 3.2 -- -- 2.83 -- -- 0.00516 -- 5.4 667 20.7 0.5
252.48 0.742 3.25 -- -- -- -- -- -0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.65 wind 3.0 720 > th dose dependent rect. 21 1
3 187.26 wind 5.0 720 > th dose independent rect. 21 1
5 190.43 wind 5.0 90 > th dose dependent rect. 24 8
8 191.22 wind 5.0 720 < th dose dependent rect. 21 2
9 191.26 wind 7.0 90 > th dose independent rect. 23 9
11 191.91 radiation 1.0 1440 < th dose independent rect. 11 1
12 191.91 radiation 1.0 1440 < th dose dependent rect. 11 1
13 191.93 precipitation 0.1 270 > th dose dependent rect. 2 2
14 191.95 precipitation 0.1 270 > th dose independent rect. 2 2
16 192.02 humidity 90.0 720 > th dose dependent rect. 20 1
17 192.07 wind 5.0 10 > th dose independent rect. 1 7
19 192.18 radiation 1.0 1440 < th dose dependent rect. 9 7
20 192.35 wind 5.0 10 > th dose dependent rect. 1 7
24 192.46 radiation 1.0 1440 < th dose dependent rect. 11 5
25 192.47 radiation 1.0 1440 < th dose independent rect. 9 6
31 192.62 wind 7.0 270 > th dose independent rect. 23 3
32 192.62 wind 7.0 270 > th dose dependent rect. 23 4
34 192.72 radiation 1.0 1440 < th dose independent rect. 11 4
38 192.77 precipitation 0.1 30 > th dose independent rect. 3 3
42 192.77 precipitation 0.1 30 > th dose dependent rect. 3 3
73 192.82 radiation 1.0 1440 > th dose independent rect. 9 6
104 193.03 wind 5.0 270 > th dose dependent rect. 1 1
111 193.14 radiation 1.0 1440 > th dose independent rect. 11 4
112 193.18 wind 5.0 270 > th dose independent rect. 1 1
148 193.88 wind 5.0 270 > th dose independent rect. 21 8
180 194.40 wind 9.0 720 > th dose independent rect. 19 2
207 194.91 wind 7.0 720 < th dose dependent rect. 18 5
216 195.04 wind 7.0 4320 > th dose independent rect. 17 1
290 195.90 wind 9.0 720 > th dose dependent rect. 19 2
301 196.18 wind 7.0 4320 < th dose independent rect. 17 1
315 196.30 wind 7.0 10 > th dose independent rect. 20 8
331 196.39 wind 5.0 720 > th dose independent rect. 17 9
335 196.44 radiation 20.0 1440 < th dose dependent rect. 11 2
336 196.44 wind 5.0 720 > th dose dependent rect. 17 10
341 196.48 radiation 20.0 1440 < th dose dependent rect. 11 4
444 197.51 radiation 1.0 1440 > th dose independent rect. 9 1
503 197.71 wind 5.0 720 < th dose independent rect. 17 7
504 197.71 wind 5.0 720 > th dose dependent rect. 17 7
534 197.96 wind 5.0 720 > th dose independent rect. 17 7
609 198.28 wind 5.0 4320 > th dose dependent rect. 18 1
687 198.96 wind 3.0 720 < th dose independent rect. 21 2
711 199.15 atmosphere 1005.0 720 < th dose independent rect. 20 1
724 199.25 radiation 10.0 1440 < th dose dependent rect. 9 13
725 199.25 radiation 10.0 1440 < th dose dependent rect. 9 15
726 199.25 radiation 10.0 1440 < th dose dependent rect. 9 18
729 199.28 wind 1.0 720 > th dose dependent rect. 17 6
761 199.42 wind 7.0 720 > th dose independent sin 12 NA
763 199.43 radiation 10.0 1440 > th dose independent rect. 17 22
766 199.44 wind 5.0 720 < th dose independent rect. 15 15
786 199.58 wind 5.0 720 < th dose independent sin 14 NA
805 199.63 wind 5.0 720 > th dose dependent sin 13 NA
824 199.81 wind 5.0 720 < th dose independent rect. 17 13
858 199.99 wind 1.0 270 < th dose dependent rect. 24 1
964 200.63 radiation 20.0 1440 < th dose dependent rect. 11 13
968 200.64 radiation 20.0 1440 < th dose dependent rect. 11 16
977 200.68 atmosphere 1005.0 270 < th dose independent rect. 23 2
978 200.68 radiation 20.0 1440 < th dose independent rect. 11 2
999 200.87 precipitation 0.1 30 > th dose independent sin 3 NA
1000 200.87 precipitation 0.1 30 > th dose dependent sin 3 NA