Os09g0570100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0570100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.34 | 0.728 | 6.59 | 1.65 | 1.14 | -51.1 | 1.89 | -102 | 0.638 | 21.4 | 15.01 | 4251 | -- | -- |
| 254.21 | 0.748 | 7.27 | 3.46 | 1.17 | -1.26 | 1.68 | -- | 0.725 | 21.4 | 15.01 | 4251 | -- | -- |
| 253 | 0.741 | 6.59 | 1.6 | 1.14 | -51.2 | -- | -102 | 0.637 | 21.4 | 15 | 4342 | -- | -- |
| 253.69 | 0.742 | 7.28 | 3.07 | 1.14 | -1.77 | -- | -- | 0.649 | 21.3 | 15.89 | 6234 | -- | -- |
| 328.07 | 0.844 | 6.6 | 1.69 | -- | -51 | -- | -101 | 0.634 | -- | 14.98 | 4123 | -- | -- |
| 257.23 | 0.752 | 7.27 | 3.51 | 1.15 | -- | 1.82 | -- | 0.738 | 21.4 | -- | -- | -- | -- |
| 269.26 | 0.768 | 7.27 | 3.45 | 1.14 | -- | -- | -- | 0.735 | 21.4 | -- | -- | -- | -- |
| 328.41 | 0.844 | 7.27 | 3.09 | -- | -1.72 | -- | -- | 0.653 | -- | 16.05 | 6465 | -- | -- |
| 304.73 | 0.813 | 7.53 | -- | 1.11 | -2.68 | -- | -- | -0.449 | 21.3 | 48.91 | 47520 | -- | -- |
| 345.75 | 0.869 | 7.24 | 3.45 | -- | -- | -- | -- | 0.731 | -- | -- | -- | -- | -- |
| 582.21 | 1.13 | 7.35 | -- | 1.15 | -- | -- | -- | 0.352 | 21.6 | -- | -- | -- | -- |
| 376.49 | 0.904 | 7.51 | -- | -- | -2.71 | -- | -- | -0.462 | -- | 59.09 | 47520 | -- | -- |
| 660.15 | 1.2 | 7.32 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 2 | 223.95 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 4 | 225.02 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 7 | 228.77 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 18 |
| 8 | 228.83 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 9 | 228.84 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 18 | 229.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 21 |
| 36 | 229.43 | humidity | 70 | 43200 | > th | dose dependent | sin | 5 | NA |
| 37 | 229.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 14 |
| 38 | 229.46 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 39 | 229.46 | humidity | 70 | 43200 | > th | dose dependent | rect. | 2 | 10 |
| 40 | 229.46 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 45 | 229.52 | humidity | 70 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 54 | 229.57 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 59 | 229.60 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 63 | 229.62 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 71 | 229.66 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 78 | 229.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 83 | 229.72 | humidity | 80 | 43200 | < th | dose independent | sin | 17 | NA |
| 86 | 229.74 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 91 | 229.75 | humidity | 70 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 92 | 229.76 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 97 | 229.78 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 98 | 229.79 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 101 | 229.80 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 12 |
| 109 | 229.83 | humidity | 70 | 43200 | > th | dose dependent | rect. | 3 | 8 |
| 120 | 229.90 | humidity | 70 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 121 | 229.91 | humidity | 80 | 43200 | > th | dose independent | sin | 17 | NA |
| 139 | 229.99 | humidity | 70 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 156 | 230.08 | humidity | 70 | 43200 | > th | dose dependent | rect. | 23 | 16 |
| 169 | 230.14 | humidity | 70 | 43200 | > th | dose dependent | sin | 16 | NA |
| 200 | 230.29 | humidity | 80 | 43200 | > th | dose independent | sin | 3 | NA |
| 251 | 230.58 | humidity | 70 | 43200 | > th | dose dependent | rect. | 15 | 10 |
| 259 | 230.62 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 13 |
| 281 | 230.69 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 304 | 230.87 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 313 | 230.92 | humidity | 80 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 362 | 231.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 371 | 231.22 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 387 | 231.33 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 14 |
| 456 | 231.77 | humidity | 80 | 43200 | < th | dose independent | no | NA | NA |
| 474 | 231.87 | humidity | 80 | 43200 | < th | dose independent | sin | 3 | NA |
| 480 | 231.90 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 482 | 231.91 | humidity | 80 | 43200 | > th | dose dependent | sin | 10 | NA |
| 489 | 231.95 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 511 | 232.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 536 | 232.15 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 551 | 232.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 583 | 232.36 | wind | 7 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 584 | 232.37 | wind | 1 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 607 | 232.43 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 609 | 232.44 | radiation | 20 | 4320 | < th | dose independent | rect. | 24 | 6 |
| 616 | 232.47 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 657 | 232.64 | wind | 5 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 670 | 232.69 | wind | 3 | 1440 | < th | dose dependent | rect. | 3 | 10 |
| 723 | 232.88 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 769 | 233.03 | wind | 1 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 779 | 233.06 | wind | 7 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 788 | 233.07 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 817 | 233.15 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 872 | 233.31 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 11 |