Os09g0570000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os09g0570000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.33 | 0.298 | 8.99 | 0.363 | 0.333 | -0.942 | 1.05 | -0.501 | 0.139 | 0.343 | 20.87 | 91 | -- | -- |
| 40.43 | 0.298 | 8.99 | 0.357 | 0.339 | -0.742 | 1.01 | -- | 0.134 | 0.281 | 21.24 | 72 | -- | -- |
| 44.47 | 0.313 | 9 | 0.288 | 0.329 | -0.711 | -- | 0.435 | 0.125 | 0.68 | 20.87 | 91 | -- | -- |
| 44.58 | 0.313 | 8.99 | 0.304 | 0.334 | -0.852 | -- | -- | 0.129 | 0.706 | 20.65 | 73 | -- | -- |
| 50.59 | 0.331 | 8.99 | 0.323 | -- | -0.593 | -- | 0.492 | 0.148 | -- | 20 | 114 | -- | -- |
| 45.2 | 0.315 | 8.98 | 0.486 | 0.265 | -- | 1.06 | -- | 0.198 | 24 | -- | -- | -- | -- |
| 49.97 | 0.331 | 8.98 | 0.443 | 0.265 | -- | -- | -- | 0.193 | 0.614 | -- | -- | -- | -- |
| 47.63 | 0.321 | 9 | 0.287 | -- | -0.691 | -- | -- | 0.0717 | -- | 34.1 | 923 | -- | -- |
| 46.65 | 0.318 | 9 | -- | 0.331 | -1.06 | -- | -- | 0.0903 | 0.872 | 20.51 | 109 | -- | -- |
| 54.37 | 0.345 | 8.97 | 0.452 | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
| 55.14 | 0.347 | 8.99 | -- | 0.272 | -- | -- | -- | 0.143 | 0.693 | -- | -- | -- | -- |
| 49.17 | 0.327 | 9.01 | -- | -- | -0.759 | -- | -- | 0.0404 | -- | 32.2 | 989 | -- | -- |
| 59.76 | 0.361 | 8.99 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 2 | 40.17 | temperature | 20 | 90 | < th | dose dependent | rect. | 22 | 22 |
| 19 | 40.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 20 | 40.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 8 |
| 26 | 40.40 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 30 | 40.41 | temperature | 20 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 36 | 40.43 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 46 | 40.47 | temperature | 20 | 90 | < th | dose dependent | no | NA | NA |
| 53 | 40.47 | temperature | 20 | 90 | < th | dose dependent | rect. | 14 | 22 |
| 70 | 40.48 | temperature | 20 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 74 | 40.48 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 75 | 40.48 | temperature | 20 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 83 | 40.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 101 | 40.51 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 102 | 40.51 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 125 | 40.53 | temperature | 20 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 139 | 40.54 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 154 | 40.55 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 178 | 40.57 | temperature | 25 | 1440 | < th | dose dependent | sin | 2 | NA |
| 193 | 40.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 202 | 40.59 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 213 | 40.59 | temperature | 20 | 90 | < th | dose dependent | rect. | 22 | 14 |
| 225 | 40.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 226 | 40.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 240 | 40.61 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 2 |
| 298 | 40.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 380 | 40.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 16 |
| 427 | 40.72 | temperature | 20 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 488 | 40.76 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 502 | 40.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 522 | 40.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 546 | 40.78 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 23 |
| 717 | 40.82 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 22 | 22 |
| 753 | 40.84 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 834 | 40.87 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 883 | 40.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 911 | 40.89 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 917 | 40.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 950 | 40.91 | temperature | 20 | 10 | < th | dose dependent | sin | 18 | NA |
| 970 | 40.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 981 | 40.92 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 2 |