Os09g0569800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0569800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 344.3 | 0.872 | 8.34 | 1.93 | 3.72 | 4.11 | 0.247 | -3.56 | 0.683 | 20.8 | 28.92 | 998 | 2.97 | -- |
| 354.64 | 0.877 | 8.37 | 1.44 | 3.63 | 4.36 | 1.74 | -- | 0.646 | 20.8 | 27.7 | 975 | 1.99 | -- |
| 344.4 | 0.864 | 8.34 | 1.98 | 3.72 | 4.1 | -- | -3.74 | 0.694 | 20.8 | 28.8 | 996 | 3.05 | -- |
| 362.79 | 0.887 | 8.4 | 1.36 | 3.57 | 4.13 | -- | -- | 0.576 | 20.7 | 27.36 | 957 | 2.05 | -- |
| 620.75 | 1.16 | 8.34 | 1.76 | -- | 3.69 | -- | -2.17 | 0.118 | -- | 106.9 | 1360 | 0.0568 | -- |
| 532.21 | 1.08 | 8.55 | 0.461 | 2.86 | -- | 1.53 | -- | -0.179 | 19.6 | -- | -- | -- | -- |
| 538.44 | 1.09 | 8.54 | 0.426 | 2.87 | -- | -- | -- | -0.175 | 19.5 | -- | -- | -- | -- |
| 579.88 | 1.12 | 8.3 | 1.36 | -- | 4.76 | -- | -- | 0.458 | -- | 149.3 | 1381 | 0.02 | -- |
| 405.83 | 0.938 | 8.46 | -- | 3.4 | 3.51 | -- | -- | 0.348 | 20.6 | 27.28 | 959 | 1.99 | -- |
| 977.79 | 1.46 | 8.48 | 0.383 | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
| 543.24 | 1.09 | 8.55 | -- | 2.86 | -- | -- | -- | -0.222 | 19.5 | -- | -- | -- | -- |
| 607.17 | 1.15 | 8.38 | -- | -- | 3.97 | -- | -- | 0.134 | -- | 190.8 | 1387 | 0.00203 | -- |
| 981.66 | 1.46 | 8.49 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 347.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 16 |
| 2 | 352.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 8 | 358.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 12 | 360.53 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 14 | 360.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 16 | 361.24 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 17 | 361.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 23 | 364.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 28 | 365.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 31 | 365.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 41 | 367.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 46 | 368.88 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 50 | 369.17 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 60 | 370.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 95 | 371.97 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 15 |
| 120 | 372.84 | temperature | 15 | 10 | > th | dose dependent | sin | 4 | NA |
| 148 | 373.85 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 20 |
| 150 | 373.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 157 | 374.12 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 175 | 374.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 178 | 374.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 199 | 375.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 203 | 375.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 205 | 375.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 209 | 375.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 215 | 375.56 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 22 |
| 230 | 375.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 239 | 375.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 242 | 376.00 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 249 | 376.07 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 256 | 376.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 282 | 376.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 291 | 376.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 331 | 376.93 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 430 | 377.81 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 488 | 378.35 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 18 |
| 495 | 378.44 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 496 | 378.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 507 | 378.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 509 | 378.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 521 | 378.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 538 | 378.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 548 | 378.95 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 21 |
| 574 | 379.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 7 |
| 610 | 379.64 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 616 | 379.68 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 620 | 379.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 627 | 379.81 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 654 | 380.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 668 | 380.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 683 | 380.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 685 | 380.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 687 | 380.32 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 689 | 380.32 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 711 | 380.48 | humidity | 90 | 43200 | > th | dose dependent | sin | 3 | NA |
| 733 | 380.72 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 743 | 380.79 | radiation | 20 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 780 | 381.08 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 828 | 381.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 844 | 381.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 907 | 382.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 910 | 382.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 19 |
| 919 | 382.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 933 | 382.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 982 | 382.68 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 998 | 382.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 4 |