Os09g0569200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase).
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Os09g0569200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.36 | 0.287 | 10.8 | -0.000178 | 0.778 | 0.422 | -0.781 | 0.996 | -0.191 | 4.09 | 24.61 | 1464 | -- | -- |
| 37.86 | 0.287 | 10.8 | -0.254 | 0.761 | 0.513 | -0.673 | -- | -0.251 | 4.06 | 25.25 | 1477 | -- | -- |
| 38.96 | 0.291 | 10.8 | 0.0128 | 0.806 | 0.439 | -- | 1.08 | -0.191 | 4.21 | 24.37 | 1570 | -- | -- |
| 39.28 | 0.292 | 10.8 | -0.264 | 0.808 | 0.53 | -- | -- | -0.24 | 4.27 | 25.25 | 1564 | -- | -- |
| 69.96 | 0.39 | 10.8 | 0.106 | -- | 0.527 | -- | 1.32 | -0.172 | -- | 22.86 | 2729 | -- | -- |
| 48.73 | 0.327 | 10.8 | -0.102 | 0.816 | -- | -0.679 | -- | -0.19 | 4.04 | -- | -- | -- | -- |
| 50 | 0.331 | 10.8 | -0.0932 | 0.815 | -- | -- | -- | -0.186 | 4.17 | -- | -- | -- | -- |
| 68.93 | 0.387 | 10.8 | -0.288 | -- | 0.689 | -- | -- | -0.276 | -- | 24.01 | 1264 | -- | -- |
| 41.08 | 0.299 | 10.8 | -- | 0.81 | 0.475 | -- | -- | -0.209 | 4.3 | 25.25 | 1566 | -- | -- |
| 85.97 | 0.433 | 10.8 | -0.0604 | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
| 50.23 | 0.332 | 10.8 | -- | 0.813 | -- | -- | -- | -0.176 | 4.18 | -- | -- | -- | -- |
| 70.94 | 0.392 | 10.8 | -- | -- | 0.624 | -- | -- | -0.229 | -- | 24.28 | 1264 | -- | -- |
| 86.07 | 0.433 | 10.8 | -- | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.48 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 3 | 36.66 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 4 | 36.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 11 | 36.91 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 13 | 36.92 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 17 | 36.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 19 | 36.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 31 | 37.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 33 | 37.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 40 | 37.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 41 | 37.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 45 | 37.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 47 | 37.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 60 | 37.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 87 | 37.26 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 101 | 37.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 118 | 37.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 148 | 37.31 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 225 | 37.34 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 336 | 37.39 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 397 | 37.42 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 421 | 37.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 513 | 37.50 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 535 | 37.52 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 686 | 37.61 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 718 | 37.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 15 |
| 730 | 37.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 834 | 37.68 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 857 | 37.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |