Os09g0568800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein S25 (40S ribosomal 25S subunit).
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Os09g0568800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein S25 (40S ribosomal 25S subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.79 | 0.369 | 13.8 | 0.485 | 0.938 | 0.314 | 0.419 | -1.27 | 0.0405 | 19 | 20.5 | 2861 | -- | -- |
| 64.92 | 0.375 | 13.7 | 0.623 | 0.905 | 0.494 | 0.578 | -- | 0.0651 | 19 | 19.6 | 11527 | -- | -- |
| 62.24 | 0.367 | 13.8 | 0.47 | 0.942 | 0.313 | -- | -1.31 | 0.0371 | 19 | 20.56 | 2861 | -- | -- |
| 64.46 | 0.374 | 13.7 | 0.697 | 0.935 | 0.613 | -- | -- | 0.0905 | 18.9 | 19 | 2749 | -- | -- |
| 108.22 | 0.485 | 13.7 | 0.435 | -- | 0.336 | -- | -1.25 | -0.0107 | -- | 21.2 | 3600 | -- | -- |
| 69.84 | 0.392 | 13.7 | 1 | 0.925 | -- | 0.535 | -- | 0.232 | 19.1 | -- | -- | -- | -- |
| 70.59 | 0.393 | 13.7 | 0.994 | 0.927 | -- | -- | -- | 0.234 | 19.1 | -- | -- | -- | -- |
| 109.38 | 0.487 | 13.7 | 0.711 | -- | 0.583 | -- | -- | 0.101 | -- | 19.45 | 2161 | -- | -- |
| 66.12 | 0.379 | 13.8 | -- | 0.926 | 0.928 | -- | -- | -0.0704 | 19 | 18.7 | 21529 | -- | -- |
| 115.87 | 0.503 | 13.7 | 0.975 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 96.61 | 0.46 | 13.7 | -- | 0.917 | -- | -- | -- | 0.123 | 19.1 | -- | -- | -- | -- |
| 110.81 | 0.49 | 13.7 | -- | -- | 0.942 | -- | -- | -0.0609 | -- | 15.88 | 46912 | -- | -- |
| 140.96 | 0.554 | 13.7 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.41 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 57.85 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 3 | 57.94 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 8 | 58.05 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 16 | 58.44 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 29 | 58.81 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 41 | 59.11 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 73 | 59.47 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 82 | 59.60 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 150 | 60.42 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 182 | 60.67 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 192 | 60.71 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 197 | 60.73 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 222 | 60.87 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 6 |
| 250 | 61.05 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 257 | 61.08 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 289 | 61.21 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 292 | 61.22 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 297 | 61.23 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 300 | 61.25 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 301 | 61.25 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 306 | 61.26 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 308 | 61.27 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 309 | 61.27 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 313 | 61.28 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 323 | 61.30 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 328 | 61.31 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 332 | 61.32 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 340 | 61.34 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 360 | 61.37 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 373 | 61.41 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 379 | 61.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 384 | 61.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 386 | 61.43 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 388 | 61.44 | temperature | 20.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 393 | 61.44 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 404 | 61.45 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 9 |
| 406 | 61.45 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 22 |
| 423 | 61.48 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 440 | 61.52 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 463 | 61.55 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 466 | 61.56 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 478 | 61.58 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 482 | 61.59 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 483 | 61.59 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 486 | 61.59 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 487 | 61.59 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 490 | 61.59 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 494 | 61.59 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 499 | 61.60 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 502 | 61.60 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 503 | 61.60 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 505 | 61.60 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 6 |
| 507 | 61.60 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 508 | 61.60 | temperature | 10.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 509 | 61.60 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 532 | 61.64 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 556 | 61.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 557 | 61.67 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 562 | 61.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 567 | 61.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 571 | 61.68 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 577 | 61.69 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 587 | 61.70 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 605 | 61.72 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 614 | 61.72 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 616 | 61.73 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 622 | 61.73 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 627 | 61.74 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 629 | 61.74 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 634 | 61.74 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 636 | 61.75 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 645 | 61.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 655 | 61.77 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 659 | 61.77 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 20 | 19 |
| 663 | 61.78 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 664 | 61.78 | wind | 1.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 668 | 61.78 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 671 | 61.79 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 673 | 61.79 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 18 |
| 680 | 61.80 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 699 | 61.82 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 704 | 61.83 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 731 | 61.86 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 769 | 61.91 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 770 | 61.91 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 789 | 61.93 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 791 | 61.93 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 15 | 18 |
| 792 | 61.93 | wind | 7.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 796 | 61.94 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 809 | 61.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 811 | 61.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 827 | 61.96 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 836 | 61.97 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 838 | 61.98 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 851 | 61.99 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 875 | 62.01 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 881 | 62.01 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 893 | 62.02 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 910 | 62.03 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 916 | 62.04 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 919 | 62.04 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 920 | 62.04 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 922 | 62.04 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 923 | 62.04 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 928 | 62.04 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 930 | 62.04 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 939 | 62.06 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 15 | 18 |
| 942 | 62.06 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 977 | 62.10 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 19 |