Os09g0568700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Germin family protein.
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Os09g0568700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Germin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.14 | 0.661 | 3.06 | -0.288 | 0.218 | 0.683 | -1.12 | -1.22 | 0.14 | 6.69 | 24.6 | 1571 | -- | -- |
| 201.54 | 0.661 | 3.07 | -0.528 | 0.25 | 0.73 | -1.23 | -- | 0.161 | 7.12 | 24.58 | 1570 | -- | -- |
| 201.19 | 0.661 | 3.06 | -0.261 | 0.204 | 0.72 | -- | -1.3 | 0.159 | 7.16 | 24.5 | 1622 | -- | -- |
| 201.92 | 0.666 | 3.11 | -0.726 | 0.281 | 0.431 | -- | -- | -0.0244 | 9.65 | 23.27 | 2542 | -- | -- |
| 202.19 | 0.662 | 3.05 | -0.216 | -- | 0.722 | -- | -1.35 | 0.184 | -- | 24.44 | 1996 | -- | -- |
| 211.6 | 0.682 | 3.15 | -0.888 | 0.221 | -- | -1.11 | -- | -0.199 | 6.82 | -- | -- | -- | -- |
| 214.63 | 0.686 | 3.15 | -0.905 | 0.22 | -- | -- | -- | -0.196 | 7.58 | -- | -- | -- | -- |
| 204.5 | 0.666 | 3.11 | -0.664 | -- | 0.584 | -- | -- | 0.0277 | -- | 22.4 | 2422 | -- | -- |
| 202.4 | 0.663 | 3.07 | -- | 0.175 | 0.939 | -- | -- | 0.15 | 9.47 | 19.8 | 28078 | -- | -- |
| 217.23 | 0.689 | 3.16 | -0.902 | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
| 236.22 | 0.719 | 3.13 | -- | 0.213 | -- | -- | -- | -0.0948 | 7.87 | -- | -- | -- | -- |
| 204.04 | 0.665 | 3.08 | -- | -- | 0.932 | -- | -- | 0.159 | -- | 19.7 | 28079 | -- | -- |
| 238.69 | 0.721 | 3.13 | -- | -- | -- | -- | -- | -0.0922 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.10 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 193.81 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 3 | 193.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 4 | 193.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 8 | 194.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 10 | 194.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 12 | 194.61 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 13 | 194.62 | humidity | 90 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 15 | 194.76 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 27 | 194.85 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 32 | 194.87 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 35 | 194.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 38 | 194.90 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 41 | 194.92 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 58 | 194.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 123 | 195.12 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 8 | NA |
| 347 | 195.25 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 349 | 195.25 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 379 | 195.27 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 452 | 195.32 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 461 | 195.33 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 462 | 195.33 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 536 | 195.38 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 571 | 195.40 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 754 | 195.56 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 784 | 195.59 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 18 | NA |
| 829 | 195.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 839 | 195.63 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 863 | 195.65 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 19 | NA |
| 959 | 195.68 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |