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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0568500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Germin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0326) R2 : 0.446
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.6 (0.137) R2dE : 0.451 R2E : 0.446
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0509 (0.0692) R2dN8 : 0.00087 R2N8 : -0.00466
σ : 0.61
deviance : 171.62
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.102
memory length : 306
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.98
open length of G : 0.946

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.4 0.608 3.25 -0.203 0.342 2.98 0.482 -5.2 0.0219 5.31 0.9529 294 3.98 1.04
170.42 0.608 3.2 0.0474 0.323 2.46 0.0146 -- 0.0536 4.55 0.9 307 3.95 0.919
167.64 0.603 3.25 -0.162 0.355 2.92 -- -4.6 0.0194 5.24 0.9441 295 3.98 0.926
168.79 0.605 3.21 0.108 0.291 2.44 -- -- 0.0881 4.27 1.1 303 4 0.967
172.41 0.612 3.24 -0.166 -- 3.07 -- -3.98 0.0423 -- 0.9526 278 3.98 0.916
257.72 0.753 3.24 0.227 0.91 -- 1.4 -- -0.138 5.55 -- -- -- --
262.55 0.759 3.24 0.233 0.918 -- -- -- -0.144 5.55 -- -- -- --
171.62 0.61 3.21 0.0105 -- 2.6 -- -- 0.0513 -- 1.101 304 3.98 0.947
167.54 0.603 3.21 -- 0.305 2.4 -- -- 0.0283 5.06 1.128 294 3.97 0.937
306.38 0.818 3.25 0.263 -- -- -- -- -0.122 -- -- -- -- --
263.98 0.76 3.24 -- 0.922 -- -- -- -0.17 5.53 -- -- -- --
171.62 0.61 3.21 -- -- 2.6 -- -- 0.0509 -- 1.102 306 3.98 0.946
308.2 0.819 3.26 -- -- -- -- -- -0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.68 wind 1 270 < th dose independent rect. 4 1
2 175.23 wind 1 270 < th dose dependent rect. 4 1
3 178.62 temperature 25 720 > th dose dependent rect. 20 1
5 181.15 temperature 20 30 > th dose dependent rect. 4 2
9 184.76 temperature 25 720 > th dose dependent rect. 20 3
11 185.24 temperature 25 720 > th dose dependent rect. 18 6
12 185.26 temperature 20 270 > th dose dependent rect. 3 2
16 185.56 temperature 25 720 > th dose dependent rect. 18 13
30 187.33 temperature 20 270 > th dose dependent rect. 1 5
68 192.37 temperature 20 30 > th dose independent rect. 4 2
73 192.79 wind 1 90 < th dose dependent rect. 4 9
86 193.88 humidity 80 720 < th dose dependent rect. 19 2
89 193.94 wind 1 90 < th dose dependent rect. 4 14
94 194.04 wind 1 90 < th dose independent rect. 4 9
107 195.47 temperature 30 14400 > th dose dependent rect. 18 1
121 195.50 atmosphere 1010 90 < th dose dependent rect. 4 1
141 197.06 temperature 30 1440 < th dose independent rect. 18 17
144 197.24 temperature 25 720 > th dose independent rect. 20 1
146 197.28 temperature 30 1440 > th dose independent rect. 16 3
160 197.34 temperature 20 270 > th dose independent rect. 1 5
161 197.36 temperature 30 1440 < th dose independent rect. 17 12
162 197.39 temperature 30 1440 < th dose independent rect. 17 8
165 197.48 temperature 30 14400 < th dose independent rect. 18 11
166 197.50 temperature 30 1440 < th dose independent rect. 17 3
169 197.52 temperature 30 1440 < th dose independent rect. 17 5
191 197.66 temperature 30 1440 < th dose independent rect. 17 15
196 197.73 temperature 30 14400 < th dose independent rect. 18 2
231 198.13 atmosphere 1010 30 < th dose dependent rect. 4 4
236 198.34 temperature 30 1440 > th dose independent rect. 17 18
241 198.51 temperature 30 1440 < th dose independent sin 10 NA
252 198.68 wind 1 90 < th dose independent rect. 4 14
261 198.75 temperature 30 14400 > th dose independent rect. 18 1
299 198.97 temperature 30 1440 > th dose independent sin 11 NA
304 199.02 temperature 30 1440 > th dose dependent sin 14 NA
309 199.04 temperature 30 1440 > th dose dependent rect. 17 18
315 199.18 wind 3 270 < th dose dependent rect. 1 5
319 199.21 temperature 30 1440 > th dose dependent sin 11 NA
329 199.38 temperature 30 1440 > th dose dependent rect. 12 7
360 199.43 temperature 30 1440 > th dose dependent rect. 16 21
438 199.91 temperature 30 1440 > th dose dependent no NA NA
649 200.72 temperature 10 720 > th dose dependent rect. 18 11
713 201.08 temperature 30 1440 > th dose dependent rect. 13 2
716 201.09 humidity 70 4320 > th dose independent rect. 19 10
718 201.18 temperature 30 1440 < th dose independent rect. 9 3
723 201.22 humidity 50 14400 < th dose independent rect. 16 1
724 201.22 temperature 25 1440 > th dose dependent rect. 3 5
727 201.25 humidity 50 14400 > th dose independent rect. 16 1
784 201.49 humidity 50 14400 > th dose independent rect. 16 13
788 201.51 humidity 70 4320 > th dose independent rect. 19 1
792 201.54 humidity 70 14400 < th dose independent rect. 19 1
833 201.63 humidity 70 720 < th dose independent rect. 19 12
834 201.65 humidity 50 14400 > th dose independent rect. 16 4
850 201.79 humidity 70 720 < th dose independent rect. 19 1
852 201.79 temperature 30 1440 > th dose independent rect. 9 3
862 201.79 humidity 70 720 < th dose dependent rect. 19 12
874 201.86 humidity 50 14400 > th dose independent rect. 16 16
921 202.07 temperature 25 14400 > th dose dependent rect. 21 2
954 202.14 temperature 30 1440 < th dose independent rect. 11 1