Os09g0568400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L40 (CEP52).
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Os09g0568400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L40 (CEP52).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.02 | 0.637 | 10.5 | 0.0443 | 0.732 | 1.3 | 0.967 | 1.74 | -0.296 | 18.9 | 8.149 | 95 | -- | -- |
| 188.83 | 0.64 | 10.5 | 0.0619 | 0.75 | 1.1 | 0.769 | -- | -0.282 | 18.2 | 7.747 | 92 | -- | -- |
| 185.75 | 0.635 | 10.5 | 0.0412 | 0.729 | 1.19 | -- | 1.9 | -0.29 | 18 | 14.95 | 114 | -- | -- |
| 190.37 | 0.643 | 10.5 | 0.0673 | 0.705 | 1.11 | -- | -- | -0.286 | 18.4 | 6.81 | 122 | -- | -- |
| 208.14 | 0.672 | 10.5 | 0.0302 | -- | 1.26 | -- | 1.68 | -0.311 | -- | 9.994 | 167 | -- | -- |
| 206.23 | 0.673 | 10.5 | 0.0665 | 0.974 | -- | 0.712 | -- | -0.233 | 16.1 | -- | -- | -- | -- |
| 207.65 | 0.675 | 10.5 | 0.0743 | 0.977 | -- | -- | -- | -0.229 | 16.1 | -- | -- | -- | -- |
| 210.24 | 0.675 | 10.5 | 0.0206 | -- | 1.17 | -- | -- | -0.319 | -- | -14.17 | 274 | -- | -- |
| 190.47 | 0.643 | 10.5 | -- | 0.705 | 1.1 | -- | -- | -0.293 | 18.4 | 6.942 | 122 | -- | -- |
| 259.53 | 0.753 | 10.5 | 0.0348 | -- | -- | -- | -- | -0.255 | -- | -- | -- | -- | -- |
| 207.8 | 0.674 | 10.5 | -- | 0.976 | -- | -- | -- | -0.237 | 16.1 | -- | -- | -- | -- |
| 210.25 | 0.675 | 10.5 | -- | -- | 1.17 | -- | -- | -0.322 | -- | -14.37 | 274 | -- | -- |
| 259.56 | 0.752 | 10.5 | -- | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.63 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 4 | 170.68 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 13 | 172.33 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 15 | 172.46 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 19 | 172.95 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 44 | 174.68 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 51 | 174.99 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 56 | 175.15 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 59 | 175.27 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 69 | 175.42 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 71 | 175.45 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 104 | 176.42 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 124 | 176.79 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 131 | 176.86 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 185 | 177.80 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 296 | 179.34 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 332 | 179.74 | humidity | 80.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 336 | 179.77 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 350 | 179.96 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 378 | 180.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 387 | 180.35 | temperature | 25.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 391 | 180.37 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 424 | 180.67 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 429 | 180.69 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 470 | 180.95 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 475 | 181.00 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 482 | 181.09 | radiation | 1.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 483 | 181.09 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 494 | 181.31 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 497 | 181.34 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 501 | 181.36 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 508 | 181.45 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 526 | 181.62 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 551 | 181.77 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 552 | 181.78 | radiation | 40.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 580 | 182.05 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 597 | 182.25 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 696 | 182.78 | radiation | 20.0 | 270 | > th | dose independent | sin | 8 | NA |
| 698 | 182.80 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 699 | 182.80 | radiation | 1.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 716 | 182.83 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 761 | 183.01 | radiation | 20.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 765 | 183.03 | radiation | 40.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 786 | 183.11 | radiation | 20.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 874 | 183.38 | radiation | 10.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 876 | 183.38 | radiation | 40.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 884 | 183.43 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 892 | 183.46 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 896 | 183.48 | radiation | 10.0 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 900 | 183.49 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 915 | 183.57 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 923 | 183.65 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 927 | 183.67 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 928 | 183.67 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 942 | 183.67 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 951 | 183.71 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 971 | 183.74 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |