Os09g0568000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0568000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.2 | 0.195 | 11.7 | 0.819 | 0.0877 | -0.349 | -0.0831 | 1.65 | 0.343 | 16.5 | 17.72 | 2238 | -- | -- |
| 19.46 | 0.207 | 11.8 | 0.354 | 0.241 | -0.509 | -0.0726 | -- | 0.225 | 14.5 | 12.85 | 6967 | -- | -- |
| 17.21 | 0.193 | 11.7 | 0.82 | 0.0848 | -0.349 | -- | 1.65 | 0.343 | 16.4 | 17.5 | 2262 | -- | -- |
| 19.48 | 0.207 | 11.8 | 0.353 | 0.242 | -0.512 | -- | -- | 0.225 | 14.5 | 10.66 | 5958 | -- | -- |
| 17.52 | 0.195 | 11.7 | 0.828 | -- | -0.349 | -- | 1.64 | 0.344 | -- | 17.57 | 2442 | -- | -- |
| 21.93 | 0.22 | 11.8 | 0.257 | 0.097 | -- | -0.146 | -- | 0.154 | 14.7 | -- | -- | -- | -- |
| 22 | 0.22 | 11.8 | 0.253 | 0.0968 | -- | -- | -- | 0.153 | 14.8 | -- | -- | -- | -- |
| 19.78 | 0.207 | 11.8 | 0.362 | -- | -0.406 | -- | -- | 0.218 | -- | 14.32 | 1124 | -- | -- |
| 22.45 | 0.222 | 11.8 | -- | 0.188 | -0.343 | -- | -- | 0.166 | 14.5 | 10.66 | 5958 | -- | -- |
| 22.55 | 0.222 | 11.8 | 0.249 | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
| 23.69 | 0.228 | 11.8 | -- | 0.0918 | -- | -- | -- | 0.125 | 14.8 | -- | -- | -- | -- |
| 22.94 | 0.223 | 11.8 | -- | -- | -0.257 | -- | -- | 0.158 | -- | 13.55 | 1024 | -- | -- |
| 24.18 | 0.23 | 11.8 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 2 | 16.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 3 | 16.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 4 | 16.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 9 | 16.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 10 | 16.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 25 | 16.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 29 | 16.59 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 41 | 16.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 73 | 16.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 86 | 16.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 87 | 16.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 122 | 16.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 175 | 16.84 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 191 | 16.87 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 203 | 16.88 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 204 | 16.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 227 | 16.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 236 | 16.92 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 265 | 16.93 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 275 | 16.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 276 | 16.93 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 278 | 16.93 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 299 | 16.94 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 301 | 16.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 302 | 16.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 309 | 16.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 313 | 16.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 327 | 16.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 336 | 16.97 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 340 | 16.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 341 | 16.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 352 | 16.97 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 363 | 16.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 366 | 16.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 369 | 16.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 373 | 16.98 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 375 | 16.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 376 | 16.98 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 384 | 16.98 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 401 | 16.98 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 406 | 16.99 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 452 | 17.00 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 454 | 17.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 458 | 17.00 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 518 | 17.01 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 542 | 17.02 | radiation | 1 | 43200 | > th | dose independent | sin | 6 | NA |
| 543 | 17.02 | radiation | 1 | 43200 | < th | dose independent | sin | 6 | NA |
| 616 | 17.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 617 | 17.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 629 | 17.04 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 655 | 17.04 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 693 | 17.05 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 695 | 17.05 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 696 | 17.05 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 702 | 17.06 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 714 | 17.06 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 739 | 17.08 | wind | 3 | 43200 | > th | dose independent | sin | 22 | NA |
| 769 | 17.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 776 | 17.09 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 794 | 17.10 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 795 | 17.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 828 | 17.10 | wind | 5 | 43200 | < th | dose dependent | sin | 21 | NA |
| 831 | 17.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 885 | 17.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 12 |
| 917 | 17.12 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 957 | 17.13 | humidity | 90 | 14400 | < th | dose independent | sin | 11 | NA |
| 985 | 17.13 | radiation | 1 | 43200 | < th | dose dependent | sin | 7 | NA |