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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0566500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.36 (0.0347) R2 : 0.304
β1 : 1.24 (0.127) R2dD : 0.151 R2D : 0.144
β2 : 0.901 (0.0895) R2dC : 0.155 R2C : 0.157
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0821 (0.0741) R2dN8 : 0.00251 R2N8 : -0.00492
σ : 0.653
deviance : 194.2
__
_____
C
peak time of C : 7.33
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.91 0.605 5.23 2.14 0.896 0.318 0.188 -3.91 0.367 7.32 23.1 1968 -- --
177.34 0.62 5.33 1.9 0.93 1.44 0.0669 -- 0.252 7.13 18.8 4409 -- --
165.99 0.6 5.23 2.14 0.896 0.314 -- -3.87 0.365 7.29 23.05 1990 -- --
176.25 0.618 5.33 1.73 0.883 1.61 -- -- 0.233 7.23 17.2 4670 -- --
208.32 0.672 5.25 2.19 -- 0.428 -- -3.66 0.405 -- 23.3 2034 -- --
194.19 0.653 5.36 1.24 0.901 -- 0.0288 -- 0.0821 7.33 -- -- -- --
194.2 0.653 5.36 1.24 0.901 -- -- -- 0.0821 7.33 -- -- -- --
219.39 0.69 5.35 1.77 -- 1.71 -- -- 0.239 -- 17.2 6330 -- --
233.38 0.715 5.39 -- 0.913 0.668 -- -- -0.0485 7.25 17.2 4670 -- --
237.3 0.72 5.38 1.26 -- -- -- -- 0.0971 -- -- -- -- --
234.89 0.717 5.39 -- 0.913 -- -- -- -0.0563 7.24 -- -- -- --
277.59 0.779 5.41 -- -- 0.655 -- -- -0.0348 -- 17.2 6330 -- --
279.03 0.78 5.41 -- -- -- -- -- -0.0425 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.72 radiation 1 4320 < th dose independent rect. 18 11
2 161.03 radiation 1 4320 < th dose independent rect. 18 8
4 161.08 radiation 1 4320 < th dose independent rect. 18 1
12 161.31 humidity 90 14400 < th dose independent rect. 20 11
27 161.87 humidity 90 14400 > th dose independent rect. 19 12
48 162.35 humidity 90 14400 > th dose independent rect. 24 9
60 162.52 humidity 90 14400 < th dose independent sin 10 NA
66 162.56 radiation 1 4320 > th dose independent rect. 18 11
79 162.82 humidity 90 14400 > th dose independent sin 10 NA
129 163.54 humidity 80 14400 > th dose dependent rect. 21 6
137 163.65 humidity 60 43200 > th dose independent rect. 9 1
147 163.75 humidity 60 43200 < th dose independent rect. 9 1
148 163.80 radiation 1 4320 > th dose independent rect. 18 1
165 163.92 humidity 80 14400 > th dose dependent rect. 22 4
182 164.15 humidity 90 14400 > th dose dependent rect. 5 2
188 164.19 humidity 80 14400 > th dose dependent rect. 24 1
196 164.28 humidity 80 14400 > th dose dependent rect. 21 10
241 164.90 humidity 90 14400 > th dose dependent rect. 4 4
248 164.97 humidity 80 43200 < th dose independent rect. 18 1
253 165.00 humidity 80 43200 > th dose independent rect. 17 3
261 165.06 humidity 90 14400 > th dose independent rect. 3 5
264 165.08 humidity 80 43200 > th dose independent rect. 18 1
267 165.10 humidity 90 43200 < th dose independent rect. 6 1
308 165.43 humidity 80 43200 > th dose dependent rect. 7 3
322 165.52 humidity 80 43200 < th dose independent rect. 16 4
332 165.59 humidity 90 14400 > th dose dependent rect. 3 6
337 165.66 humidity 90 14400 > th dose independent rect. 21 1
373 165.85 humidity 80 14400 > th dose dependent sin 10 NA
384 165.90 humidity 90 14400 > th dose dependent rect. 23 15
400 165.94 humidity 90 14400 > th dose dependent sin 7 NA
404 165.95 humidity 90 14400 > th dose independent rect. 4 3
411 165.98 humidity 50 43200 > th dose independent rect. 8 9
447 166.08 humidity 50 43200 > th dose independent rect. 14 1
455 166.10 humidity 50 43200 > th dose independent rect. 13 4
470 166.15 humidity 50 43200 < th dose independent rect. 8 9
484 166.18 humidity 50 43200 < th dose independent rect. 13 5
518 166.25 wind 1 43200 > th dose independent rect. 8 5
553 166.31 wind 1 43200 > th dose independent rect. 6 7
557 166.34 humidity 90 43200 > th dose independent rect. 6 1
579 166.38 humidity 70 43200 < th dose dependent rect. 8 2
587 166.40 humidity 50 43200 > th dose independent sin 23 NA
594 166.41 wind 3 43200 < th dose dependent rect. 11 3
617 166.44 atmosphere 1015 43200 > th dose independent rect. 12 3
634 166.46 atmosphere 1015 43200 < th dose independent rect. 13 1
703 166.54 wind 3 43200 < th dose dependent rect. 10 6
752 166.60 humidity 50 43200 < th dose independent sin 23 NA
814 166.66 temperature 20 1440 < th dose independent rect. 5 2
822 166.67 humidity 50 43200 < th dose independent rect. 11 2
826 166.67 temperature 20 1440 < th dose independent rect. 13 18
831 166.67 radiation 40 43200 < th dose dependent rect. 18 8
833 166.68 atmosphere 1015 43200 > th dose independent rect. 11 8
860 166.70 temperature 20 1440 > th dose independent rect. 13 18
863 166.70 atmosphere 1015 43200 > th dose dependent rect. 24 1
873 166.72 radiation 1 14400 > th dose independent rect. 17 13
908 166.76 humidity 50 43200 > th dose independent rect. 11 1
989 166.86 atmosphere 1015 43200 > th dose dependent rect. 23 3