Os09g0565500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Invasin/intimin cell-adhesion domain containing protein.
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Os09g0565500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Invasin/intimin cell-adhesion domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.57 | 0.276 | 10.8 | 0.982 | 0.686 | 0.563 | -0.144 | -1.21 | 0.239 | 19.6 | 25.6 | 23 | -- | -- |
| 35.09 | 0.278 | 10.7 | 1.11 | 0.696 | 0.445 | -0.141 | -- | 0.271 | 19.5 | 25.5 | 28 | -- | -- |
| 34.62 | 0.274 | 10.8 | 0.988 | 0.688 | 0.552 | -- | -1.2 | 0.24 | 19.6 | 25.6 | 21 | -- | -- |
| 35.08 | 0.276 | 10.7 | 1.11 | 0.692 | 0.446 | -- | -- | 0.27 | 19.5 | 25.5 | 13 | -- | -- |
| 51.28 | 0.334 | 10.8 | 0.828 | -- | 0.85 | -- | -1.46 | 0.155 | -- | 24.3 | 326 | -- | -- |
| 38.02 | 0.289 | 10.7 | 1.18 | 0.768 | -- | 0.0453 | -- | 0.297 | 18.7 | -- | -- | -- | -- |
| 38.03 | 0.289 | 10.7 | 1.18 | 0.768 | -- | -- | -- | 0.297 | 18.7 | -- | -- | -- | -- |
| 52.82 | 0.338 | 10.7 | 1.03 | -- | 0.746 | -- | -- | 0.205 | -- | 24.2 | 325 | -- | -- |
| 65.95 | 0.378 | 10.8 | -- | 0.628 | 0.684 | -- | -- | 0.0752 | 20.1 | 22.6 | 74 | -- | -- |
| 68.87 | 0.388 | 10.7 | 1.16 | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
| 74.63 | 0.404 | 10.8 | -- | 0.754 | -- | -- | -- | 0.165 | 18.8 | -- | -- | -- | -- |
| 78.38 | 0.412 | 10.8 | -- | -- | 1.26 | -- | -- | 0.00415 | -- | 13.29 | 446 | -- | -- |
| 104.42 | 0.477 | 10.7 | -- | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.85 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 10 | 30.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 38 | 31.17 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 2 |
| 54 | 31.48 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 10 |
| 103 | 31.86 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 15 |
| 109 | 31.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 115 | 31.94 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 119 | 31.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 123 | 31.96 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 132 | 31.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 12 |
| 135 | 31.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 8 |
| 162 | 32.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 17 |
| 197 | 32.20 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 202 | 32.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 15 |
| 228 | 32.31 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 294 | 32.50 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 295 | 32.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 386 | 32.66 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 423 | 32.75 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 2 |
| 485 | 32.90 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 2 |
| 528 | 32.98 | temperature | 10 | 30 | > th | dose dependent | rect. | 8 | 22 |
| 568 | 33.07 | temperature | 30 | 30 | < th | dose independent | rect. | 6 | 17 |
| 589 | 33.10 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 721 | 33.28 | wind | 9 | 90 | < th | dose independent | rect. | 7 | 23 |
| 734 | 33.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 758 | 33.32 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 762 | 33.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 778 | 33.34 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 796 | 33.36 | radiation | 1 | 90 | > th | dose independent | sin | 9 | NA |
| 839 | 33.41 | radiation | 1 | 90 | < th | dose independent | sin | 9 | NA |
| 843 | 33.41 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 10 |
| 912 | 33.48 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 10 |
| 944 | 33.52 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 8 |