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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0564200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C1A, papain family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0365) R2 : 0.0986
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.55 (0.506) R2dE : 0.0977 R2E : 0.0953
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0885 (0.0769) R2dN8 : 0.00337 R2N8 : 0.000989
σ : 0.685
deviance : 216.55
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.4
memory length : 87
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.04
open length of G : 2.62

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
214.89 0.689 2.86 0.221 0.052 2.79 -0.551 -1.86 0.119 16.7 18.3 77 2.07 2.78
215.06 0.683 2.87 0.202 0.0555 3.48 -0.496 -- 0.106 16.8 18.4 78 2.08 2.77
214.97 0.683 2.85 0.2 0.0968 2.94 -- -1.36 0.14 13.2 18.33 80 2.03 2.73
214.8 0.683 2.86 0.222 0.103 3.58 -- -- 0.114 12.6 18.41 85 2.05 2.66
215.44 0.684 2.86 0.214 -- 3.12 -- -1.2 0.114 -- 18.36 82 2.01 2.73
238.96 0.725 2.87 0.108 0.104 -- 0.11 -- 0.0725 8.79 -- -- -- --
239 0.724 2.87 0.112 0.104 -- -- -- 0.0725 8.71 -- -- -- --
215.45 0.684 2.86 0.215 -- 3.59 -- -- 0.114 -- 18.42 85 2.07 2.67
216.02 0.685 2.86 -- 0.101 3.57 -- -- 0.102 11.9 18.4 85 2.07 2.65
239.62 0.723 2.87 0.112 -- -- -- -- 0.0734 -- -- -- -- --
239.33 0.724 2.87 -- 0.105 -- -- -- 0.06 8.63 -- -- -- --
216.55 0.685 2.87 -- -- 3.55 -- -- 0.0885 -- 18.4 87 2.04 2.62
239.95 0.723 2.87 -- -- -- -- -- 0.0609 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.59 temperature 20.0 90 < th dose dependent rect. 2 3
2 222.78 temperature 20.0 90 < th dose dependent rect. 2 1
4 223.34 temperature 20.0 90 < th dose dependent rect. 2 9
7 224.58 temperature 20.0 90 < th dose dependent rect. 2 6
9 224.62 humidity 90.0 30 > th dose dependent rect. 4 1
20 224.84 temperature 20.0 90 < th dose independent rect. 2 3
30 225.30 atmosphere 1010.0 10 < th dose dependent rect. 4 1
34 225.48 wind 9.0 10 < th dose independent rect. 5 23
42 225.57 temperature 20.0 10 < th dose dependent rect. 4 1
76 226.54 temperature 20.0 30 < th dose independent rect. 2 10
83 226.71 temperature 30.0 10 < th dose dependent rect. 4 1
89 226.85 wind 1.0 90 > th dose independent rect. 3 14
145 227.55 atmosphere 1000.0 90 > th dose independent rect. 5 22
147 227.56 humidity 90.0 30 > th dose independent rect. 4 1
149 227.61 wind 3.0 10 < th dose dependent rect. 4 1
158 227.67 wind 5.0 10 < th dose independent rect. 4 1
169 227.74 atmosphere 1005.0 90 > th dose dependent rect. 4 1
172 227.76 radiation 1.0 10 < th dose dependent rect. 4 1
174 227.78 temperature 10.0 10 > th dose independent rect. 4 1
177 227.78 humidity 50.0 10 > th dose independent rect. 4 1
180 227.78 atmosphere 995.0 10 > th dose independent rect. 4 1
181 227.78 atmosphere 1010.0 10 < th dose independent rect. 4 1
183 227.78 radiation 1.0 10 < th dose independent rect. 4 1
188 227.78 temperature 10.0 10 > th dose independent rect. 5 23
200 227.87 precipitation 0.1 10 < th dose independent rect. 4 1
201 227.87 wind 1.0 90 > th dose independent rect. 3 2
202 227.87 precipitation 0.1 10 < th dose dependent rect. 4 1
205 227.89 temperature 20.0 90 > th dose dependent rect. 4 1
223 228.15 wind 5.0 90 < th dose independent rect. 3 2
232 228.25 atmosphere 995.0 10 > th dose independent rect. 5 23
244 228.34 wind 9.0 10 < th dose dependent rect. 6 21
267 228.36 temperature 10.0 10 > th dose dependent rect. 4 1
272 228.39 atmosphere 995.0 10 > th dose dependent rect. 4 1
288 228.54 temperature 25.0 10 > th dose independent rect. 4 2
296 228.60 temperature 30.0 90 < th dose independent rect. 5 22
303 228.65 wind 7.0 10 < th dose independent rect. 6 21
322 228.76 temperature 25.0 10 > th dose independent rect. 2 4
345 228.87 humidity 90.0 10 < th dose independent rect. 4 2
365 228.89 precipitation 0.1 90 < th dose independent rect. 5 22
368 228.89 precipitation 0.1 90 < th dose dependent rect. 5 22
440 229.21 wind 7.0 1440 < th dose independent rect. 5 1
442 229.21 temperature 10.0 1440 > th dose independent rect. 5 1
445 229.21 temperature 30.0 1440 < th dose independent rect. 5 1
449 229.21 humidity 50.0 1440 > th dose independent rect. 5 1
458 229.21 atmosphere 995.0 1440 > th dose independent rect. 5 1
459 229.21 atmosphere 1015.0 1440 < th dose independent rect. 5 1
460 229.21 radiation 20.0 1440 < th dose independent rect. 5 1
470 229.21 temperature 10.0 1440 > th dose independent rect. 6 23
480 229.25 wind 1.0 30 > th dose dependent rect. 4 1
499 229.37 wind 7.0 90 < th dose independent rect. 5 8
508 229.40 temperature 15.0 90 > th dose dependent rect. 5 7
537 229.51 wind 9.0 90 < th dose dependent rect. 5 8
555 229.62 temperature 20.0 30 > th dose independent sin 5 NA
559 229.63 atmosphere 1000.0 90 > th dose independent rect. 17 10
564 229.64 wind 9.0 10 < th dose dependent rect. 6 8
568 229.66 wind 7.0 10 < th dose independent rect. 6 8
592 229.73 wind 1.0 10 > th dose independent rect. 2 4
594 229.73 radiation 1.0 10 < th dose independent rect. 7 20
595 229.73 temperature 15.0 10 > th dose dependent rect. 6 6
663 229.96 wind 1.0 10 < th dose dependent rect. 1 1
673 229.99 temperature 15.0 90 > th dose independent rect. 5 8
674 229.99 radiation 1.0 30 < th dose independent rect. 13 14
706 230.06 temperature 30.0 90 < th dose independent rect. 17 10
733 230.10 radiation 1.0 30 < th dose dependent rect. 13 14
755 230.15 radiation 1.0 30 < th dose independent rect. 15 12
758 230.16 humidity 60.0 90 > th dose independent rect. 17 10
774 230.19 wind 3.0 270 < th dose independent rect. 1 4
779 230.20 temperature 10.0 90 > th dose independent rect. 17 10
780 230.20 radiation 20.0 90 < th dose independent rect. 17 10
783 230.20 temperature 10.0 90 > th dose independent rect. 3 14
784 230.20 atmosphere 1015.0 90 < th dose independent rect. 3 14
791 230.21 radiation 40.0 90 < th dose dependent rect. 17 10
797 230.23 precipitation 0.1 90 < th dose independent rect. 17 10
801 230.23 precipitation 0.1 90 < th dose dependent rect. 17 10
811 230.24 radiation 1.0 30 < th dose dependent rect. 15 12
835 230.30 atmosphere 995.0 90 > th dose independent rect. 3 14
841 230.32 temperature 20.0 10 < th dose dependent sin 3 NA
866 230.38 wind 9.0 90 < th dose independent rect. 17 10
895 230.45 wind 1.0 90 < th dose dependent rect. 8 4
909 230.49 wind 1.0 90 < th dose independent rect. 8 4
911 230.50 precipitation 0.1 90 < th dose independent rect. 3 14
912 230.50 humidity 70.0 30 > th dose dependent rect. 3 9
915 230.50 precipitation 0.1 90 < th dose dependent rect. 3 14
921 230.52 wind 9.0 10 < th dose dependent rect. 8 19
933 230.58 temperature 20.0 30 < th dose independent sin 4 NA
940 230.60 wind 7.0 10 < th dose independent rect. 8 19
959 230.65 temperature 10.0 1440 > th dose independent rect. 18 10
962 230.65 humidity 50.0 1440 > th dose independent rect. 18 10
964 230.65 radiation 20.0 1440 < th dose independent rect. 18 10
976 230.65 temperature 10.0 1440 > th dose independent rect. 4 14