Os09g0564000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C1A, papain family protein.
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Os09g0564000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C1A, papain family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.83 | 0.692 | 6.86 | -3.31 | 0.252 | 4.8 | 1.59 | -2.44 | -0.706 | 4.56 | 8.038 | 5497 | -- | -- |
| 221.79 | 0.694 | 6.77 | -2.78 | 0.239 | 4.95 | 1.53 | -- | -0.557 | 4.72 | 6.646 | 5473 | -- | -- |
| 222.01 | 0.694 | 6.86 | -3.27 | 0.345 | 4.79 | -- | -2.17 | -0.727 | 2.02 | 7.147 | 5698 | -- | -- |
| 226.3 | 0.701 | 6.79 | -2.81 | 0.33 | 4.92 | -- | -- | -0.602 | 2.02 | 6.911 | 5689 | -- | -- |
| 227.12 | 0.702 | 6.86 | -3.27 | -- | 4.86 | -- | -2.16 | -0.697 | -- | 9.326 | 5486 | -- | -- |
| 625.7 | 1.17 | 6.54 | -0.427 | 0.524 | -- | 1.18 | -- | 0.459 | 2.93 | -- | -- | -- | -- |
| 629.95 | 1.18 | 6.55 | -0.453 | 0.528 | -- | -- | -- | 0.452 | 2.27 | -- | -- | -- | -- |
| 231.15 | 0.708 | 6.78 | -2.8 | -- | 4.98 | -- | -- | -0.569 | -- | 8.663 | 5493 | -- | -- |
| 368.13 | 0.894 | 6.66 | -- | 0.158 | 3.32 | -- | -- | -0.0284 | 1.19 | 6.796 | 2715 | -- | -- |
| 646.49 | 1.19 | 6.54 | -0.431 | -- | -- | -- | -- | 0.465 | -- | -- | -- | -- | -- |
| 635.36 | 1.18 | 6.54 | -- | 0.519 | -- | -- | -- | 0.503 | 2.26 | -- | -- | -- | -- |
| 369.34 | 0.895 | 6.66 | -- | -- | 3.36 | -- | -- | -0.0338 | -- | 9.781 | 2657 | -- | -- |
| 651.39 | 1.19 | 6.53 | -- | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 2 | 212.87 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 3 | 213.32 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 14 | 213.76 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 18 | 214.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 21 | 215.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 22 | 215.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 26 | 215.27 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 30 | 215.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 38 | 215.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 66 | 217.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 86 | 218.70 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 98 | 219.88 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 137 | 222.34 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 144 | 222.51 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 163 | 222.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 183 | 223.55 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 189 | 223.81 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 214 | 224.37 | radiation | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 229 | 224.75 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 246 | 225.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 258 | 225.80 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 263 | 226.03 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 264 | 226.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 266 | 226.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 281 | 226.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 287 | 226.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 291 | 226.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 311 | 226.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 313 | 227.11 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 317 | 227.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 323 | 227.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 364 | 227.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 21 |
| 365 | 227.86 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 369 | 227.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 372 | 227.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 373 | 227.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 18 |
| 390 | 228.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 17 |
| 408 | 228.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 421 | 228.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 422 | 228.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 433 | 228.32 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 437 | 228.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 448 | 228.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 462 | 228.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 21 |
| 476 | 228.56 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 497 | 228.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 9 |
| 500 | 228.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 12 |
| 509 | 228.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 576 | 228.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 579 | 229.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 597 | 229.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 599 | 229.01 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 604 | 229.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 612 | 229.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 627 | 229.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 641 | 229.43 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 648 | 229.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 653 | 229.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 681 | 229.58 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 712 | 229.68 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 771 | 229.99 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 779 | 230.06 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 799 | 230.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 8 |
| 801 | 230.14 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 802 | 230.15 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 842 | 230.40 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 852 | 230.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 898 | 230.76 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 915 | 230.90 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 15 |
| 916 | 230.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 919 | 230.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 925 | 230.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 21 |
| 961 | 231.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 972 | 231.32 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 981 | 231.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |