Os09g0562700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pre-pro-TPE4A protein precursor.
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Os09g0562700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pre-pro-TPE4A protein precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.58 | 0.469 | 10.5 | 0.602 | 3.86 | 3.1 | 0.923 | 5.86 | -0.162 | 7.25 | 20.03 | 4304 | -- | -- |
| 108.65 | 0.485 | 10.3 | 0.852 | 3.86 | 0.929 | 0.702 | -- | -0.0216 | 7.22 | 34.24 | 11363 | -- | -- |
| 101.84 | 0.47 | 10.5 | 0.634 | 3.87 | 3.09 | -- | 5.78 | -0.15 | 7.23 | 20.12 | 4328 | -- | -- |
| 103.05 | 0.473 | 10.3 | 1.43 | 3.78 | 1.25 | -- | -- | 0.13 | 7.23 | 32.98 | 29385 | -- | -- |
| 877.6 | 1.38 | 10.6 | 0.682 | -- | 3.01 | -- | 5.77 | -0.052 | -- | 21.37 | 5003 | -- | -- |
| 124.87 | 0.524 | 10.4 | 0.264 | 3.83 | -- | 0.903 | -- | -0.309 | 7.27 | -- | -- | -- | -- |
| 127.05 | 0.528 | 10.4 | 0.283 | 3.84 | -- | -- | -- | -0.311 | 7.26 | -- | -- | -- | -- |
| 628.46 | 1.17 | 10.3 | 1.22 | -- | 4.02 | -- | -- | 0.24 | -- | 34.7 | 528 | -- | -- |
| 117.81 | 0.506 | 10.4 | -- | 3.86 | 0.68 | -- | -- | -0.234 | 7.19 | 99.26 | 2760 | -- | -- |
| 907.17 | 1.41 | 10.5 | 0.35 | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
| 129.16 | 0.532 | 10.4 | -- | 3.84 | -- | -- | -- | -0.343 | 7.25 | -- | -- | -- | -- |
| 667.13 | 1.2 | 10.4 | -- | -- | 3.83 | -- | -- | 0.172 | -- | 49.99 | 508 | -- | -- |
| 910.41 | 1.41 | 10.5 | -- | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.75 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 5 | 95.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 6 | 95.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 7 | 95.89 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 11 | 95.89 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 22 | 95.93 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 24 | 95.93 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 36 | 95.97 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 39 | 96.00 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 40 | 96.00 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 44 | 96.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 46 | 96.04 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 57 | 96.10 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 61 | 96.13 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 62 | 96.13 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 80 | 96.20 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 89 | 96.20 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 108 | 96.24 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 116 | 96.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 121 | 96.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 126 | 96.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 128 | 96.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 130 | 96.35 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 135 | 96.37 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 179 | 96.49 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 190 | 96.50 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 202 | 96.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 217 | 96.53 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 222 | 96.54 | radiation | 1.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 225 | 96.54 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 243 | 96.56 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 289 | 96.68 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 322 | 96.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 324 | 96.76 | radiation | 1.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 334 | 96.76 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 367 | 96.82 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 404 | 96.87 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 414 | 96.89 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 422 | 96.90 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 429 | 96.91 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 447 | 96.92 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 456 | 96.93 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 468 | 96.93 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 483 | 96.96 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 501 | 96.98 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 548 | 97.00 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 554 | 97.01 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 617 | 97.05 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 681 | 97.08 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 711 | 97.09 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 732 | 97.09 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 780 | 97.12 | radiation | 1.0 | 43200 | < th | dose independent | no | NA | NA |
| 787 | 97.12 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 896 | 97.16 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 910 | 97.17 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 945 | 97.19 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 964 | 97.20 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 968 | 97.20 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 975 | 97.20 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 16 |
| 977 | 97.20 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 20 |