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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0562600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.0502) R2 : 0.166
β1 : 1.3 (0.185) R2dD : 0.0952 R2D : 0.118
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.15 (0.229) R2dE : 0.0498 R2E : 0.0731
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0817 (0.109) R2dN8 : 0.00147 R2N8 : -0.00614
σ : 0.935
deviance : 403.26
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 57.04
memory length : 7118
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
394.33 0.933 4.25 1.44 0.489 1.14 0.549 0.438 0.0651 5.65 69.23 6110 -- --
394.62 0.925 4.25 1.45 0.489 1.16 0.526 -- 0.0735 5.63 69.15 6105 -- --
395.06 0.926 4.25 1.44 0.492 1.15 -- 0.396 0.0683 5.58 69.05 6111 -- --
395.29 0.926 4.25 1.46 0.495 1.17 -- -- 0.0734 5.56 69.06 6115 -- --
403.26 0.935 4.26 1.48 -- 1.23 -- 0.627 0.0585 -- 64.83 7110 -- --
413.58 0.953 4.27 1.43 0.454 -- 0.665 -- -0.0323 5.58 -- -- -- --
414.67 0.954 4.28 1.43 0.458 -- -- -- -0.0351 5.57 -- -- -- --
403.26 0.935 4.26 1.3 -- 1.15 -- -- 0.0817 -- 57.04 7118 -- --
431.5 0.967 4.24 -- 0.525 1.82 -- -- 0.0672 5.14 52.83 4490 -- --
425.56 0.964 4.28 1.45 -- -- -- -- -0.0241 -- -- -- -- --
468.66 1.01 4.31 -- 0.481 -- -- -- -0.195 5.45 -- -- -- --
438.42 0.975 4.29 -- -- 1.55 -- -- -0.0595 -- 53.34 7076 -- --
480.73 1.02 4.32 -- -- -- -- -- -0.185 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 388.44 wind 7.0 90 > th dose dependent rect. 13 2
2 388.64 radiation 20.0 4320 < th dose dependent rect. 21 8
7 391.07 wind 7.0 90 > th dose independent rect. 13 2
9 391.30 radiation 40.0 30 < th dose independent rect. 11 18
10 391.63 wind 5.0 90 < th dose independent rect. 9 20
13 392.04 wind 9.0 10 > th dose independent rect. 13 1
25 392.04 wind 9.0 10 > th dose dependent rect. 13 1
41 392.35 atmosphere 1000.0 270 > th dose independent rect. 4 3
54 393.26 humidity 60.0 14400 > th dose independent rect. 16 1
58 393.33 humidity 60.0 14400 < th dose independent rect. 16 1
60 393.47 atmosphere 1000.0 10 > th dose independent rect. 5 6
62 393.61 atmosphere 1000.0 90 > th dose independent rect. 5 5
64 393.82 radiation 1.0 4320 < th dose independent rect. 21 8
66 393.95 atmosphere 1000.0 270 > th dose independent rect. 3 5
80 394.54 humidity 60.0 14400 < th dose dependent rect. 14 1
82 394.66 humidity 60.0 14400 > th dose independent rect. 21 8
84 394.74 radiation 1.0 1440 > th dose independent rect. 12 1
85 394.74 atmosphere 1000.0 10 > th dose dependent rect. 5 6
86 394.78 humidity 60.0 14400 > th dose independent rect. 15 19
88 394.91 humidity 60.0 14400 < th dose independent rect. 15 19
92 394.97 humidity 60.0 14400 < th dose dependent rect. 13 4
101 395.14 atmosphere 1000.0 270 < th dose dependent rect. 15 1
103 395.21 atmosphere 995.0 270 > th dose dependent rect. 4 3
107 395.28 atmosphere 1005.0 10 > th dose independent rect. 14 15
116 395.50 atmosphere 1000.0 90 > th dose dependent rect. 4 6
118 395.52 atmosphere 1000.0 90 < th dose independent rect. 15 5
121 395.56 wind 9.0 90 < th dose dependent rect. 9 20
126 395.62 atmosphere 1000.0 270 < th dose dependent rect. 14 4
135 395.73 wind 7.0 4320 > th dose dependent rect. 13 1
137 395.74 wind 7.0 270 < th dose independent rect. 7 21
139 395.77 humidity 60.0 14400 < th dose dependent rect. 13 21
143 395.79 radiation 1.0 1440 > th dose independent rect. 12 4
148 395.84 radiation 1.0 1440 > th dose independent rect. 8 8
155 395.88 wind 3.0 90 > th dose dependent rect. 12 1
162 395.92 humidity 60.0 14400 < th dose dependent rect. 13 19
163 395.93 humidity 60.0 14400 > th dose independent rect. 15 14
170 395.96 atmosphere 1000.0 270 < th dose independent rect. 15 1
171 395.96 humidity 60.0 14400 > th dose independent rect. 15 8
197 396.04 radiation 10.0 4320 < th dose dependent rect. 3 2
200 396.07 radiation 1.0 1440 < th dose independent rect. 8 8
203 396.09 radiation 40.0 30 < th dose independent rect. 11 1
204 396.09 wind 1.0 90 > th dose dependent rect. 12 12
208 396.13 wind 1.0 270 > th dose independent rect. 5 1
212 396.15 humidity 60.0 4320 > th dose independent rect. 13 22
216 396.16 wind 5.0 90 < th dose independent rect. 20 9
222 396.23 radiation 40.0 30 < th dose independent rect. 11 3
224 396.24 humidity 60.0 14400 < th dose independent sin 11 NA
225 396.24 atmosphere 1000.0 10 < th dose independent rect. 1 1
232 396.24 atmosphere 1000.0 10 < th dose dependent rect. 1 1
241 396.26 wind 1.0 30 < th dose independent rect. 6 2
264 396.35 humidity 60.0 14400 < th dose dependent sin 18 NA
277 396.38 humidity 60.0 14400 < th dose independent rect. 14 8
288 396.40 humidity 60.0 14400 > th dose independent sin 11 NA
306 396.47 humidity 60.0 14400 < th dose dependent rect. 6 11
317 396.48 radiation 1.0 1440 < th dose independent rect. 11 5
336 396.50 atmosphere 1000.0 270 < th dose independent rect. 13 6
388 396.63 radiation 1.0 90 < th dose independent rect. 14 1
389 396.63 radiation 1.0 90 < th dose dependent rect. 14 1
407 396.66 wind 7.0 4320 > th dose dependent rect. 13 3
437 396.68 temperature 15.0 1440 > th dose independent rect. 12 1
446 396.70 humidity 60.0 14400 < th dose dependent no NA NA
561 396.81 wind 1.0 30 > th dose dependent rect. 12 21
586 396.97 humidity 60.0 14400 < th dose dependent rect. 16 23
589 396.99 temperature 30.0 10 < th dose independent rect. 5 6
596 397.01 wind 5.0 90 < th dose independent rect. 9 8
598 397.01 atmosphere 1005.0 90 < th dose dependent rect. 7 1
608 397.08 humidity 60.0 14400 > th dose independent rect. 21 10
652 397.27 radiation 30.0 10 < th dose independent rect. 5 6
655 397.28 precipitation 0.1 270 < th dose independent rect. 7 21
656 397.28 precipitation 0.1 270 < th dose dependent rect. 7 21
662 397.32 atmosphere 995.0 270 > th dose independent rect. 7 21
682 397.42 atmosphere 1015.0 14400 > th dose dependent rect. 21 2
711 397.46 atmosphere 1015.0 14400 > th dose dependent rect. 20 5
716 397.48 radiation 40.0 30 > th dose dependent rect. 12 2
725 397.50 atmosphere 1015.0 14400 > th dose independent rect. 15 7
755 397.53 precipitation 0.1 1440 < th dose independent rect. 12 1
758 397.53 precipitation 0.1 1440 < th dose dependent rect. 12 1
767 397.55 atmosphere 1010.0 90 < th dose dependent rect. 15 5
768 397.56 atmosphere 1015.0 14400 > th dose independent rect. 18 3
777 397.57 radiation 10.0 270 < th dose independent rect. 4 3
785 397.57 humidity 80.0 1440 < th dose independent rect. 1 13
795 397.59 radiation 1.0 1440 > th dose independent rect. 8 5
803 397.60 atmosphere 1015.0 14400 < th dose independent rect. 15 6
806 397.60 atmosphere 1015.0 30 < th dose dependent rect. 9 3
808 397.61 wind 7.0 4320 > th dose independent rect. 13 1
814 397.62 wind 1.0 10 > th dose independent rect. 11 1
830 397.65 atmosphere 1015.0 14400 < th dose independent rect. 12 1
837 397.66 atmosphere 1015.0 14400 < th dose independent rect. 12 9
843 397.67 atmosphere 1015.0 14400 > th dose dependent sin 15 NA
854 397.69 precipitation 0.1 90 < th dose independent rect. 9 20
860 397.69 precipitation 0.1 90 < th dose dependent rect. 9 20
906 397.76 atmosphere 1015.0 14400 > th dose dependent rect. 10 14
922 397.78 atmosphere 1015.0 14400 > th dose independent rect. 12 1
928 397.78 humidity 60.0 4320 > th dose independent rect. 9 9
956 397.81 humidity 60.0 4320 > th dose independent rect. 9 20
970 397.82 humidity 60.0 4320 > th dose independent rect. 9 15
978 397.82 humidity 70.0 14400 < th dose dependent rect. 18 15
985 397.83 humidity 60.0 4320 > th dose independent rect. 3 15
995 397.83 humidity 60.0 4320 > th dose independent rect. 22 20