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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0561600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.12 (0.0585) R2 : 0.161
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.06 (0.139) R2dC : 0.0812 R2C : 0.0781
β3 : 2.5 (0.306) R2dE : 0.0841 R2E : 0.0805
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.049 (0.123) R2dN8 : -0.000482 R2N8 : -0.00179
σ : 1.1
deviance : 555.7
__
_____
C
peak time of C : 0.562
E
wheather : temperature
threshold : 30.3
memory length : 5658
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.43
open length of G : 0.311

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
542.6 1.09 4.49 -3.73 1.03 11.3 -0.842 -88.6 0.028 2.12 30.1 5024 7.99 1.01
612.64 1.15 4.14 -0.256 0.801 3.59 1.28 -- 0.118 23.7 29.9 1525 8.49 0.283
545.16 1.09 4.48 -3.64 1.03 11.4 -- -89.7 0.0321 2.26 30.13 5640 7.99 1.01
560.21 1.1 4.12 -0.238 1.06 2.57 -- -- 0.058 0.256 30.3 5658 8.43 0.317
607.56 1.15 4.47 -3.61 -- 11.3 -- -88 0.057 -- 30.11 5640 7.98 1.03
597.87 1.15 4.11 -0.0343 1.01 -- -0.877 -- -0.0418 2.01 -- -- -- --
600.75 1.15 4.1 -0.00841 1.02 -- -- -- -0.0372 2.13 -- -- -- --
608.17 1.15 4.08 -0.0481 -- 2.08 -- -- 0.0538 -- 30.49 5519 8.4 0.313
555.7 1.1 4.12 -- 1.06 2.5 -- -- 0.049 0.562 30.3 5658 8.43 0.311
662.41 1.2 4.09 0.034 -- -- -- -- -0.013 -- -- -- -- --
600.75 1.15 4.1 -- 1.02 -- -- -- -0.0363 2.13 -- -- -- --
606.84 1.15 4.06 -- -- 2.27 -- -- 0.0581 -- 30.46 5656 8.45 0.33
662.44 1.2 4.09 -- -- -- -- -- -0.0168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 543.52 temperature 30.0 4320 > th dose dependent rect. 8 1
15 548.26 temperature 30.0 4320 > th dose independent rect. 8 1
43 553.46 temperature 30.0 4320 < th dose independent rect. 23 10
45 554.56 temperature 30.0 4320 < th dose independent rect. 8 1
46 555.79 wind 1.0 4320 < th dose dependent rect. 6 2
61 557.57 atmosphere 1000.0 10 > th dose independent rect. 5 18
64 557.84 wind 5.0 30 < th dose independent rect. 14 15
68 558.47 temperature 30.0 4320 < th dose independent rect. 4 5
69 558.52 temperature 30.0 4320 < th dose independent rect. 21 12
70 558.65 temperature 30.0 4320 < th dose independent rect. 19 14
75 559.97 radiation 10.0 10 < th dose independent rect. 5 10
78 560.25 radiation 40.0 1440 > th dose independent rect. 8 1
95 560.35 humidity 70.0 10 > th dose dependent rect. 5 10
96 560.63 radiation 40.0 1440 < th dose independent rect. 16 17
97 560.72 humidity 80.0 30 > th dose independent rect. 5 10
99 560.95 humidity 70.0 10 > th dose dependent rect. 5 13
103 561.32 radiation 40.0 1440 < th dose independent rect. 1 8
104 561.54 radiation 10.0 30 < th dose independent rect. 5 22
106 561.61 radiation 40.0 1440 < th dose independent rect. 8 1
119 562.42 radiation 10.0 30 < th dose independent rect. 5 18
127 562.88 humidity 80.0 30 > th dose independent rect. 5 13
132 562.97 wind 5.0 90 < th dose independent rect. 7 22
144 563.63 humidity 50.0 10 > th dose dependent rect. 5 11
149 564.03 radiation 30.0 10 < th dose dependent rect. 5 10
151 564.05 radiation 10.0 270 < th dose independent rect. 12 19
152 564.10 humidity 50.0 10 > th dose dependent rect. 5 18
155 564.26 humidity 70.0 10 > th dose dependent rect. 5 17
170 564.81 radiation 20.0 270 < th dose dependent rect. 11 20
174 564.84 humidity 80.0 30 > th dose independent rect. 5 17
203 565.64 radiation 10.0 10 < th dose independent rect. 5 7
206 565.70 humidity 80.0 90 > th dose dependent rect. 5 2
219 565.98 atmosphere 1000.0 30 > th dose independent rect. 5 15
237 566.07 temperature 25.0 4320 < th dose independent rect. 2 4
241 566.17 atmosphere 1000.0 10 > th dose independent rect. 5 22
248 566.48 radiation 10.0 30 < th dose independent rect. 5 13
264 566.98 humidity 70.0 30 > th dose dependent rect. 5 5
286 567.14 wind 9.0 90 < th dose dependent rect. 7 22
298 567.50 radiation 10.0 10 < th dose independent rect. 5 5
299 567.53 radiation 20.0 30 < th dose dependent rect. 5 22
301 567.57 radiation 10.0 90 < th dose dependent rect. 5 12
308 567.74 atmosphere 1000.0 10 > th dose independent rect. 7 23
310 567.80 radiation 10.0 30 < th dose independent rect. 5 3
313 567.86 humidity 80.0 30 > th dose independent rect. 5 5
322 568.04 wind 1.0 4320 < th dose independent rect. 6 2
326 568.08 radiation 20.0 30 < th dose dependent rect. 5 18
331 568.17 wind 9.0 270 < th dose dependent rect. 14 12
333 568.23 wind 1.0 4320 > th dose independent rect. 6 2
334 568.24 radiation 10.0 270 < th dose independent rect. 16 15
344 568.37 temperature 25.0 4320 > th dose independent rect. 5 1
353 568.53 precipitation 0.1 4320 < th dose independent rect. 6 2
354 568.53 humidity 80.0 30 > th dose independent rect. 5 3
355 568.53 precipitation 0.1 4320 < th dose dependent rect. 6 2
360 568.62 temperature 25.0 4320 > th dose dependent rect. 5 1
367 568.69 atmosphere 1000.0 10 > th dose independent rect. 5 13
386 568.94 wind 5.0 30 < th dose independent rect. 11 18
401 569.12 wind 5.0 270 < th dose independent sin 14 NA
407 569.19 wind 5.0 90 > th dose dependent rect. 17 16
409 569.21 atmosphere 1000.0 10 > th dose independent rect. 5 11
421 569.31 temperature 25.0 90 < th dose independent rect. 12 7
424 569.32 humidity 80.0 14400 < th dose dependent rect. 4 1
430 569.46 wind 7.0 720 > th dose independent rect. 19 15
433 569.52 humidity 50.0 30 > th dose independent rect. 5 18
443 569.63 atmosphere 1000.0 10 < th dose independent rect. 8 19
456 569.72 wind 9.0 30 < th dose dependent rect. 15 14
457 569.73 temperature 25.0 4320 < th dose independent rect. 5 1
472 569.87 wind 5.0 90 > th dose independent rect. 17 16
494 570.05 temperature 15.0 30 > th dose dependent rect. 5 2
506 570.12 atmosphere 1015.0 90 < th dose dependent rect. 5 2
514 570.18 wind 5.0 270 > th dose independent sin 14 NA
529 570.25 wind 1.0 90 > th dose independent rect. 7 22
533 570.32 wind 5.0 270 > th dose dependent sin 13 NA
545 570.45 radiation 10.0 90 < th dose dependent rect. 5 2
569 570.67 radiation 1.0 90 > th dose independent rect. 7 22
573 570.71 wind 5.0 30 < th dose independent rect. 22 7
619 571.14 temperature 10.0 30 > th dose dependent rect. 7 22
629 571.24 radiation 1.0 90 > th dose independent rect. 7 12
654 571.36 wind 5.0 90 > th dose dependent rect. 17 10
678 571.51 radiation 10.0 30 < th dose independent rect. 5 15
693 571.60 humidity 60.0 10 > th dose dependent rect. 5 22
714 571.78 atmosphere 1010.0 90 < th dose independent rect. 5 2
724 571.86 temperature 25.0 90 < th dose independent rect. 12 9
732 571.93 humidity 80.0 14400 < th dose independent rect. 5 1
757 572.05 wind 3.0 1440 < th dose dependent rect. 11 2
766 572.11 radiation 1.0 270 > th dose independent rect. 7 10
769 572.12 wind 5.0 270 > th dose independent rect. 12 18
775 572.15 wind 5.0 270 > th dose dependent rect. 13 18
779 572.17 radiation 30.0 10 < th dose dependent rect. 5 7
783 572.20 precipitation 0.1 4320 > th dose independent rect. 6 1
785 572.20 precipitation 0.1 4320 > th dose dependent rect. 6 1
811 572.27 radiation 30.0 10 < th dose independent rect. 5 3
815 572.29 humidity 80.0 14400 > th dose independent rect. 4 2
871 572.48 precipitation 0.1 4320 > th dose independent rect. 6 3
872 572.48 precipitation 0.1 4320 > th dose dependent rect. 6 3
874 572.49 wind 1.0 90 > th dose independent rect. 23 6
894 572.65 precipitation 0.1 90 < th dose independent rect. 7 22
896 572.65 precipitation 0.1 90 < th dose dependent rect. 7 22
908 572.72 radiation 30.0 10 < th dose independent rect. 5 10
910 572.73 humidity 80.0 30 < th dose independent rect. 5 12
932 572.81 radiation 1.0 1440 < th dose independent rect. 11 1
935 572.81 radiation 1.0 1440 < th dose dependent rect. 11 1
936 572.82 wind 5.0 720 > th dose dependent rect. 20 14
957 572.92 temperature 25.0 4320 > th dose independent rect. 24 1
976 573.02 wind 7.0 30 < th dose independent rect. 5 2
978 573.02 temperature 10.0 30 > th dose independent rect. 5 2
980 573.02 temperature 30.0 30 < th dose independent rect. 5 2
981 573.02 humidity 50.0 30 > th dose independent rect. 5 2
984 573.02 atmosphere 995.0 30 > th dose independent rect. 5 2
990 573.02 temperature 10.0 30 > th dose independent rect. 7 22
994 573.04 wind 1.0 10 > th dose independent rect. 23 6
997 573.05 wind 5.0 720 < th dose independent rect. 24 18
1000 573.06 radiation 10.0 30 > th dose independent sin 23 NA