Os09g0561500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EGF domain containing protein.
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Os09g0561500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EGF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 395.42 | 0.934 | 4.1 | 0.381 | 0.714 | 0.462 | -0.53 | 4.11 | -0.552 | 1.8 | 42.42 | 1422 | -- | -- |
| 419.91 | 0.954 | 4.15 | -0.0412 | 0.868 | 0.596 | -0.379 | -- | -0.675 | 2.1 | 39.96 | 1908 | -- | -- |
| 396.49 | 0.927 | 4.1 | 0.401 | 0.721 | 0.453 | -- | 4.1 | -0.546 | 1.88 | 42.59 | 1426 | -- | -- |
| 420.17 | 0.955 | 4.13 | -0.0501 | 0.854 | 0.635 | -- | -- | -0.674 | 2.25 | 40 | 1904 | -- | -- |
| 426.72 | 0.962 | 4.1 | 0.423 | -- | 0.595 | -- | 4.34 | -0.55 | -- | 43.5 | 1391 | -- | -- |
| 428.95 | 0.971 | 4.11 | -0.0104 | 0.782 | -- | -0.351 | -- | -0.585 | 1.84 | -- | -- | -- | -- |
| 429.42 | 0.97 | 4.11 | 0.000362 | 0.783 | -- | -- | -- | -0.584 | 1.89 | -- | -- | -- | -- |
| 448.67 | 0.987 | 4.12 | -0.0186 | -- | 0.688 | -- | -- | -0.656 | -- | 40 | 1295 | -- | -- |
| 420.18 | 0.955 | 4.12 | -- | 0.858 | 0.64 | -- | -- | -0.664 | 2.27 | 40 | 1904 | -- | -- |
| 466.46 | 1.01 | 4.1 | 0.0326 | -- | -- | -- | -- | -0.565 | -- | -- | -- | -- | -- |
| 429.42 | 0.969 | 4.11 | -- | 0.783 | -- | -- | -- | -0.584 | 1.89 | -- | -- | -- | -- |
| 448.55 | 0.986 | 4.12 | -- | -- | 0.739 | -- | -- | -0.677 | -- | 40 | 1296 | -- | -- |
| 466.49 | 1.01 | 4.1 | -- | -- | -- | -- | -- | -0.569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 388.71 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 2 | 388.77 | radiation | 40 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 20 | 388.99 | radiation | 40 | 1440 | > th | dose dependent | sin | 14 | NA |
| 24 | 389.38 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 20 | 21 |
| 25 | 389.41 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 32 | 390.04 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 46 | 390.99 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 16 | 22 |
| 73 | 391.48 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 74 | 391.49 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 76 | 391.53 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 84 | 391.95 | atmosphere | 1005 | 270 | > th | dose dependent | sin | 8 | NA |
| 86 | 392.05 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 88 | 392.08 | atmosphere | 1010 | 720 | < th | dose dependent | sin | 11 | NA |
| 90 | 392.13 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 24 | 14 |
| 92 | 392.14 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 122 | 392.60 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 126 | 392.65 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 132 | 392.72 | atmosphere | 1010 | 270 | < th | dose dependent | sin | 7 | NA |
| 159 | 392.97 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 224 | 393.35 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 229 | 393.40 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 230 | 393.42 | atmosphere | 995 | 720 | > th | dose dependent | sin | 11 | NA |
| 371 | 394.56 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 397 | 394.62 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 2 | 14 |
| 418 | 394.77 | atmosphere | 995 | 30 | > th | dose dependent | sin | 6 | NA |
| 480 | 395.10 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 498 | 395.13 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 528 | 395.33 | radiation | 40 | 1440 | > th | dose independent | sin | 14 | NA |
| 538 | 395.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 547 | 395.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 15 |
| 651 | 395.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 732 | 396.06 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 744 | 396.13 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 753 | 396.20 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 904 | 396.24 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 945 | 396.34 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 963 | 396.42 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 965 | 396.42 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 967 | 396.43 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 973 | 396.45 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 974 | 396.45 | atmosphere | 1005 | 270 | > th | dose dependent | no | NA | NA |
| 977 | 396.46 | temperature | 25 | 10 | < th | dose independent | rect. | 9 | 16 |
| 994 | 396.52 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 10 | 21 |