Os09g0561000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os09g0561000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.38 | 0.733 | 3.23 | -0.965 | 0.359 | 0.329 | 1.46 | -5.05 | -0.354 | 5.63 | 20.5 | 82 | 23.4 | 6.73 |
| 289.95 | 0.799 | 3.17 | -0.316 | 0.384 | 0.197 | -0.584 | -- | -0.21 | 5.43 | 20.5 | 82 | 23.4 | 6.73 |
| 247.26 | 0.732 | 3.23 | -0.902 | 0.334 | 0.384 | -- | -4.49 | -0.348 | 6.42 | 20.5 | 73 | 23.4 | 6.66 |
| 290.07 | 0.798 | 3.16 | -0.341 | 0.335 | 0.287 | -- | -- | -0.182 | 7.56 | 18.1 | 21 | 23.9 | 6.97 |
| 251.63 | 0.739 | 3.23 | -0.878 | -- | 0.497 | -- | -4.28 | -0.342 | -- | 20.52 | 85 | 23.2 | 7.02 |
| 291.99 | 0.801 | 3.17 | -0.3 | 0.518 | -- | -0.716 | -- | -0.219 | 4.88 | -- | -- | -- | -- |
| 292.99 | 0.802 | 3.16 | -0.296 | 0.523 | -- | -- | -- | -0.215 | 5.41 | -- | -- | -- | -- |
| 291.11 | 0.795 | 3.16 | -0.383 | -- | 0.389 | -- | -- | -0.227 | -- | 18.3 | 12 | 23.9 | 8.02 |
| 292.38 | 0.796 | 3.16 | -- | 0.299 | 0.291 | -- | -- | -0.172 | 6.93 | 18.3 | 22 | 23.9 | 6.87 |
| 307.22 | 0.819 | 3.17 | -0.279 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 295.3 | 0.804 | 3.16 | -- | 0.518 | -- | -- | -- | -0.182 | 5.44 | -- | -- | -- | -- |
| 294.08 | 0.799 | 3.16 | -- | -- | 0.389 | -- | -- | -0.227 | -- | 18.3 | 12 | 23.9 | 8.02 |
| 309.26 | 0.821 | 3.16 | -- | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 250.40 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 7 |
| 2 | 254.23 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 7 |
| 5 | 255.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 8 | 255.41 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 11 | 255.71 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 12 | 255.77 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 27 | 258.40 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 35 | 258.80 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 36 | 258.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 40 | 259.02 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 41 | 259.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 43 | 259.25 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 56 | 260.00 | temperature | 20.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 57 | 260.09 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 58 | 260.17 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 72 | 261.01 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 75 | 261.14 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 89 | 261.85 | temperature | 20.0 | 270 | > th | dose independent | sin | 10 | NA |
| 94 | 262.19 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 95 | 262.24 | temperature | 20.0 | 270 | < th | dose independent | sin | 8 | NA |
| 103 | 262.56 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 7 |
| 105 | 262.66 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 106 | 262.67 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 108 | 262.74 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 109 | 262.75 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 115 | 262.96 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 23 | 8 |
| 156 | 263.84 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 165 | 263.99 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 5 |
| 188 | 264.03 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 217 | 264.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 228 | 264.38 | temperature | 25.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 283 | 265.51 | temperature | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 305 | 265.79 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 312 | 265.86 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 7 |
| 337 | 266.08 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 352 | 266.28 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 356 | 266.35 | wind | 3.0 | 90 | > th | dose dependent | rect. | 1 | 7 |
| 358 | 266.40 | wind | 7.0 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 359 | 266.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 363 | 266.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 21 |
| 366 | 266.53 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 367 | 266.54 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 3 |
| 374 | 266.63 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 376 | 266.65 | wind | 7.0 | 270 | > th | dose independent | rect. | 23 | 5 |
| 381 | 266.68 | precipitation | 0.1 | 30 | > th | dose independent | sin | 2 | NA |
| 384 | 266.73 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 2 | NA |
| 394 | 266.83 | precipitation | 0.1 | 30 | < th | dose independent | sin | 3 | NA |
| 395 | 266.83 | precipitation | 0.1 | 30 | < th | dose dependent | sin | 3 | NA |
| 398 | 266.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 400 | 266.86 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 418 | 267.03 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 454 | 267.28 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 464 | 267.30 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 514 | 267.69 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 6 |
| 520 | 267.72 | precipitation | 0.1 | 90 | < th | dose independent | sin | 6 | NA |
| 522 | 267.72 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 6 | NA |
| 523 | 267.72 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 8 |
| 539 | 267.81 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 541 | 267.82 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 19 |
| 562 | 267.93 | temperature | 20.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 573 | 267.98 | wind | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 604 | 268.16 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 634 | 268.35 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 7 |
| 662 | 268.49 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 23 | 9 |
| 666 | 268.50 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 680 | 268.54 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 8 |
| 691 | 268.57 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 719 | 268.64 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 722 | 268.64 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 752 | 268.75 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 754 | 268.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 777 | 268.83 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 785 | 268.86 | humidity | 90.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 803 | 268.95 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 811 | 268.97 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 855 | 269.07 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 21 | 9 |
| 857 | 269.09 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 893 | 269.21 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 912 | 269.29 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 921 | 269.32 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 933 | 269.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 954 | 269.39 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 959 | 269.40 | wind | 5.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 992 | 269.51 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 1 |