Os09g0560300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0560300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.99 | 0.149 | 12.5 | -0.538 | 0.121 | 0.463 | 0.0617 | -0.709 | -0.0789 | 4.82 | 9.186 | 675 | -- | -- |
| 10.35 | 0.15 | 12.5 | -0.415 | 0.128 | 0.467 | 0.183 | -- | -0.0453 | 5.34 | 9.921 | 669 | -- | -- |
| 10 | 0.147 | 12.5 | -0.54 | 0.122 | 0.459 | -- | -0.729 | -0.0793 | 4.66 | 10.12 | 669 | -- | -- |
| 10.41 | 0.15 | 12.5 | -0.411 | 0.125 | 0.448 | -- | -- | -0.0451 | 4.67 | 9.48 | 669 | -- | -- |
| 10.35 | 0.15 | 12.5 | -0.542 | -- | 0.425 | -- | -0.628 | -0.0771 | -- | 10.67 | 984 | -- | -- |
| 12.8 | 0.168 | 12.5 | -0.306 | 0.101 | -- | -0.139 | -- | 0.0229 | 0.475 | -- | -- | -- | -- |
| 12.87 | 0.168 | 12.5 | -0.301 | 0.102 | -- | -- | -- | 0.0234 | 0.894 | -- | -- | -- | -- |
| 10.69 | 0.152 | 12.5 | -0.417 | -- | 0.414 | -- | -- | -0.0447 | -- | 10.22 | 1024 | -- | -- |
| 14.34 | 0.176 | 12.5 | -- | 0.105 | 0.262 | -- | -- | 0.024 | 3.3 | 1.818 | 607 | -- | -- |
| 13.52 | 0.172 | 12.5 | -0.297 | -- | -- | -- | -- | 0.0253 | -- | -- | -- | -- | -- |
| 15.26 | 0.183 | 12.5 | -- | 0.0973 | -- | -- | -- | 0.0568 | 0.758 | -- | -- | -- | -- |
| 14.7 | 0.179 | 12.5 | -- | -- | 0.238 | -- | -- | 0.0254 | -- | 15.9 | 897 | -- | -- |
| 15.85 | 0.186 | 12.5 | -- | -- | -- | -- | -- | 0.0582 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 3 | 9.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 5 | 9.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 6 | 9.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 17 | 9.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 26 | 9.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 32 | 9.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 50 | 9.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 64 | 9.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 89 | 9.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 115 | 9.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 122 | 9.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 192 | 9.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 213 | 9.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 274 | 9.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 291 | 10.00 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 379 | 10.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 393 | 10.05 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 410 | 10.06 | radiation | 10 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 454 | 10.08 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 479 | 10.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 484 | 10.09 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 485 | 10.09 | temperature | 15 | 720 | > th | dose dependent | sin | 2 | NA |
| 486 | 10.09 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 527 | 10.10 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 562 | 10.11 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 623 | 10.13 | radiation | 10 | 4320 | < th | dose independent | sin | 14 | NA |
| 626 | 10.13 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 630 | 10.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 754 | 10.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 761 | 10.16 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 789 | 10.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 811 | 10.17 | humidity | 90 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 853 | 10.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |