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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0559900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0368) R2 : 0.00439
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.11 (0.0775) R2dN8 : 0.00566 R2N8 : 0.00439
σ : 0.693
deviance : 220.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.73 0.684 2.98 0.137 0.175 0.0648 1.51 1.58 0.14 11.4 10 10 -- --
218.3 0.688 2.97 0.309 0.114 -0.314 -0.179 -- 0.181 10.7 39.94 47520 -- --
217.75 0.693 2.98 0.113 0.193 0.084 -- 0.53 0.123 11.2 10 10 -- --
217.93 0.688 3 7.88e-05 0.252 0.15 -- -- 0.065 11.3 13.68 2 -- --
218.59 0.692 2.99 0.12 -- -0.0362 -- 0.539 0.13 -- 10 10 -- --
219.75 0.695 2.99 0.0822 0.109 -- -0.14 -- 0.119 10.7 -- -- -- --
219.83 0.694 2.99 0.0762 0.111 -- -- -- 0.118 10.4 -- -- -- --
220.29 0.694 2.99 0.0791 -- 0.0547 -- -- 0.119 -- 12.88 2 -- --
217.11 0.69 2.99 -- 0.345 0.258 -- -- 0.112 11.5 12.79 2 -- --
220.58 0.694 2.99 0.0744 -- -- -- -- 0.118 -- -- -- -- --
219.98 0.694 2.99 -- 0.111 -- -- -- 0.11 10.3 -- -- -- --
220.45 0.694 2.99 -- -- 0.0529 -- -- 0.11 -- 12.88 2 -- --
220.73 0.693 2.99 -- -- -- -- -- 0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.92 radiation 10.0 10 < th dose independent rect. 8 2
3 203.63 temperature 20.0 10 < th dose independent rect. 6 2
4 203.70 temperature 20.0 30 < th dose dependent rect. 6 11
11 204.08 temperature 20.0 10 < th dose dependent rect. 6 3
14 204.21 temperature 20.0 10 < th dose dependent rect. 6 6
23 204.37 temperature 20.0 10 < th dose independent rect. 6 11
25 204.51 temperature 20.0 10 < th dose independent rect. 6 7
59 205.32 radiation 10.0 10 < th dose dependent rect. 10 1
124 206.08 wind 5.0 10 > th dose independent rect. 8 1
126 206.08 wind 5.0 10 > th dose dependent rect. 8 1
180 207.71 wind 1.0 30 < th dose independent rect. 9 1
184 208.11 humidity 90.0 4320 < th dose independent rect. 5 1
190 208.35 wind 1.0 10 < th dose dependent rect. 9 1
194 208.51 humidity 90.0 720 < th dose independent rect. 4 2
197 208.73 humidity 90.0 4320 < th dose dependent rect. 3 3
202 208.99 radiation 10.0 10 < th dose independent rect. 7 10
213 209.29 atmosphere 1005.0 30 > th dose dependent rect. 2 1
214 209.39 atmosphere 1005.0 30 > th dose independent rect. 2 1
217 209.42 temperature 20.0 30 > th dose dependent rect. 2 1
221 209.48 wind 3.0 30 < th dose dependent rect. 2 1
226 209.52 wind 3.0 30 < th dose independent rect. 2 1
227 209.52 temperature 20.0 30 > th dose independent rect. 2 1
238 209.61 temperature 10.0 30 > th dose independent rect. 2 1
240 209.61 temperature 30.0 30 < th dose independent rect. 2 1
241 209.61 humidity 50.0 30 > th dose independent rect. 2 1
245 209.61 atmosphere 1010.0 30 < th dose independent rect. 2 1
247 209.61 radiation 1.0 30 < th dose independent rect. 2 1
252 209.61 precipitation 0.1 30 < th dose independent rect. 2 1
256 209.61 temperature 10.0 30 > th dose independent rect. 3 23
257 209.61 radiation 1.0 30 < th dose dependent rect. 2 1
262 209.61 precipitation 0.1 30 < th dose dependent rect. 2 1
264 209.65 humidity 50.0 30 > th dose dependent rect. 2 1
287 209.95 temperature 30.0 30 < th dose dependent rect. 2 1
288 209.96 humidity 50.0 90 < th dose independent rect. 13 2
289 209.96 humidity 50.0 90 < th dose dependent rect. 13 2
293 210.04 atmosphere 1015.0 30 < th dose dependent rect. 2 1
294 210.06 wind 3.0 90 > th dose dependent rect. 4 3
296 210.08 atmosphere 1000.0 90 < th dose dependent rect. 12 1
299 210.11 humidity 80.0 90 < th dose dependent rect. 6 1
300 210.14 atmosphere 1000.0 90 < th dose independent rect. 12 1
313 210.30 wind 1.0 30 > th dose independent rect. 2 1
317 210.33 temperature 20.0 90 > th dose independent rect. 3 9
320 210.34 humidity 80.0 270 < th dose dependent rect. 4 3
324 210.39 humidity 80.0 4320 > th dose independent rect. 3 4
331 210.51 humidity 70.0 4320 > th dose dependent rect. 3 3
339 210.54 temperature 30.0 10 > th dose dependent rect. 10 2
353 210.67 humidity 90.0 720 < th dose dependent rect. 4 1
356 210.69 wind 9.0 30 < th dose independent rect. 3 23
367 210.76 temperature 30.0 90 > th dose independent rect. 11 1
402 210.86 temperature 20.0 90 < th dose independent sin 0 NA
403 210.86 radiation 10.0 10 < th dose independent rect. 7 7
411 210.90 temperature 30.0 10 > th dose independent rect. 10 2
415 210.92 radiation 10.0 10 < th dose independent rect. 21 20
420 210.93 temperature 30.0 10 > th dose dependent rect. 16 20
430 210.99 temperature 30.0 10 > th dose independent rect. 18 18
433 211.01 temperature 30.0 10 > th dose independent rect. 16 20
488 211.08 humidity 80.0 90 < th dose independent rect. 6 1
493 211.10 temperature 20.0 90 > th dose independent sin 0 NA
527 211.18 humidity 90.0 720 < th dose independent rect. 1 5
600 211.44 humidity 90.0 720 < th dose independent rect. 23 7
654 211.59 radiation 20.0 10 < th dose dependent rect. 7 10
680 211.66 humidity 90.0 720 < th dose dependent rect. 24 6
832 212.21 radiation 10.0 10 < th dose independent rect. 20 15
841 212.24 radiation 20.0 10 < th dose dependent rect. 21 20
870 212.36 temperature 10.0 30 > th dose dependent rect. 3 23
874 212.39 atmosphere 995.0 4320 > th dose independent rect. 3 1
875 212.39 atmosphere 1015.0 1440 < th dose independent rect. 3 1
943 212.60 temperature 20.0 90 < th dose dependent sin 23 NA
960 212.64 humidity 80.0 720 > th dose independent rect. 24 1
962 212.65 humidity 70.0 720 > th dose dependent rect. 24 1
983 212.74 humidity 80.0 720 > th dose independent rect. 24 7
986 212.75 temperature 20.0 90 > th dose independent rect. 5 16
987 212.75 temperature 25.0 10 < th dose dependent sin 0 NA