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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0559400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0292) R2 : 0.0211
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.193 (0.0615) R2dN8 : 0.0273 R2N8 : 0.0211
σ : 0.55
deviance : 138.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.41 0.507 3.35 1.01 0.471 -0.56 0.486 2.2 0.35 1.85 26.57 1466 -- --
117.54 0.505 3.42 0.434 0.513 -0.333 0.528 -- 0.221 1.89 26.7 1339 -- --
117.31 0.504 3.35 1.01 0.469 -0.554 -- 2.26 0.347 1.82 26.7 1443 -- --
118.58 0.507 3.42 0.424 0.492 -0.319 -- -- 0.227 1.93 26.7 1384 -- --
124.61 0.523 3.39 0.575 -- -0.861 -- 1.8 0.273 -- 26.6 1708 -- --
122.49 0.519 3.42 0.331 0.454 -- 0.451 -- 0.222 1.91 -- -- -- --
123.28 0.52 3.42 0.317 0.455 -- -- -- 0.22 1.91 -- -- -- --
124.89 0.523 3.41 0.425 -- -0.72 -- -- 0.246 -- 26.29 1751 -- --
122.9 0.516 3.44 -- 0.502 -0.249 -- -- 0.152 1.9 28.5 1261 -- --
135.75 0.544 3.41 0.336 -- -- -- -- 0.23 -- -- -- -- --
125.93 0.525 3.43 -- 0.46 -- -- -- 0.184 1.93 -- -- -- --
129.56 0.532 3.42 -- -- -0.655 -- -- 0.199 -- 26.29 1751 -- --
138.73 0.55 3.42 -- -- -- -- -- 0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.09 radiation 1.0 90 > th dose dependent rect. 18 1
11 111.03 radiation 1.0 43200 < th dose dependent rect. 3 1
12 111.15 wind 7.0 90 > th dose independent rect. 18 1
13 111.66 wind 7.0 90 > th dose dependent rect. 18 1
14 111.69 radiation 1.0 90 > th dose independent rect. 18 1
24 111.78 humidity 50.0 720 > th dose dependent rect. 17 2
26 112.13 humidity 70.0 720 > th dose independent rect. 17 2
31 112.43 humidity 70.0 720 > th dose independent rect. 16 11
39 113.06 temperature 25.0 90 > th dose dependent rect. 1 3
44 113.28 wind 1.0 10 < th dose independent rect. 7 20
46 113.32 temperature 25.0 90 > th dose independent rect. 1 3
56 113.46 wind 1.0 10 < th dose independent rect. 9 18
68 113.63 humidity 80.0 43200 < th dose dependent rect. 22 1
72 113.68 temperature 20.0 720 > th dose dependent rect. 3 4
74 113.70 humidity 80.0 43200 < th dose dependent rect. 21 3
84 113.76 wind 9.0 1440 < th dose independent rect. 3 1
85 113.76 temperature 10.0 1440 > th dose independent rect. 3 1
88 113.76 temperature 30.0 1440 < th dose independent rect. 3 1
92 113.76 humidity 50.0 1440 > th dose independent rect. 3 1
101 113.76 atmosphere 995.0 1440 > th dose independent rect. 3 1
102 113.76 radiation 1.0 1440 < th dose independent rect. 3 1
122 113.76 temperature 10.0 1440 > th dose independent rect. 4 23
133 113.79 atmosphere 1005.0 90 > th dose dependent rect. 24 4
134 113.80 temperature 30.0 720 < th dose independent rect. 17 10
140 113.82 temperature 10.0 30 > th dose dependent rect. 3 23
142 113.88 temperature 10.0 90 > th dose dependent rect. 3 21
174 114.23 humidity 60.0 720 < th dose independent rect. 8 2
195 114.28 temperature 30.0 720 < th dose independent rect. 17 2
198 114.29 wind 9.0 30 < th dose independent rect. 3 23
216 114.33 humidity 60.0 4320 > th dose independent rect. 7 2
218 114.33 wind 9.0 270 > th dose dependent rect. 16 18
222 114.36 humidity 80.0 43200 > th dose independent rect. 24 1
227 114.39 wind 1.0 10 < th dose independent rect. 2 1
228 114.39 humidity 60.0 4320 > th dose independent rect. 4 5
236 114.42 humidity 60.0 720 < th dose dependent rect. 9 1
254 114.46 humidity 80.0 43200 < th dose independent rect. 23 2
256 114.46 humidity 60.0 4320 > th dose independent rect. 22 11
257 114.47 temperature 25.0 30 < th dose independent rect. 2 1
275 114.49 temperature 30.0 30 < th dose dependent rect. 2 1
285 114.53 humidity 80.0 43200 > th dose independent rect. 21 9
286 114.53 atmosphere 995.0 30 > th dose dependent rect. 2 1
290 114.54 wind 9.0 30 < th dose independent rect. 2 1
291 114.54 temperature 10.0 30 > th dose independent rect. 2 1
294 114.54 humidity 50.0 30 > th dose independent rect. 2 1
298 114.54 atmosphere 995.0 30 > th dose independent rect. 2 1
300 114.54 atmosphere 1010.0 30 < th dose independent rect. 2 1
302 114.54 radiation 1.0 30 < th dose independent rect. 2 1
307 114.54 precipitation 0.1 30 < th dose independent rect. 2 1
309 114.54 humidity 80.0 43200 < th dose independent rect. 21 4
310 114.54 temperature 10.0 30 > th dose independent rect. 3 23
312 114.54 temperature 30.0 43200 > th dose dependent rect. 11 1
313 114.54 humidity 90.0 1440 < th dose dependent rect. 18 1
314 114.54 radiation 1.0 30 < th dose dependent rect. 2 1
319 114.54 precipitation 0.1 30 < th dose dependent rect. 2 1
338 114.55 wind 5.0 10 > th dose independent rect. 20 1
358 114.57 temperature 30.0 43200 > th dose dependent sin 7 NA
362 114.57 atmosphere 1015.0 30 < th dose dependent rect. 2 1
381 114.58 temperature 10.0 30 > th dose dependent rect. 2 1
382 114.58 humidity 50.0 30 > th dose dependent rect. 2 1
402 114.59 wind 3.0 30 < th dose dependent rect. 2 1
435 114.61 temperature 30.0 43200 > th dose independent rect. 10 1
458 114.62 temperature 30.0 43200 < th dose independent rect. 10 1
476 114.63 wind 1.0 43200 > th dose dependent rect. 5 12
515 114.66 atmosphere 995.0 30 > th dose independent rect. 3 23
518 114.66 atmosphere 1005.0 10 > th dose dependent rect. 1 4
562 114.68 temperature 30.0 43200 > th dose dependent no NA NA
600 114.68 wind 3.0 43200 > th dose dependent rect. 4 15
700 114.68 temperature 30.0 43200 > th dose dependent rect. 14 23
757 114.69 precipitation 0.1 10 < th dose independent rect. 3 23
771 114.69 wind 9.0 43200 < th dose dependent rect. 5 12
786 114.69 precipitation 0.1 10 < th dose dependent rect. 3 23
801 114.70 temperature 30.0 43200 < th dose independent rect. 1 12
812 114.71 temperature 30.0 43200 > th dose independent sin 8 NA
823 114.71 temperature 30.0 43200 < th dose independent rect. 3 8
832 114.71 temperature 30.0 43200 < th dose independent rect. 20 15
901 114.73 temperature 30.0 43200 < th dose independent sin 8 NA
906 114.73 wind 9.0 270 > th dose independent rect. 16 18
920 114.74 wind 1.0 43200 > th dose dependent sin 1 NA
942 114.76 humidity 70.0 720 < th dose independent sin 14 NA
949 114.77 wind 1.0 30 > th dose independent rect. 2 1