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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0559200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RuvA domain 2-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0336) R2 : 0.00231
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0726 (0.0708) R2dN8 : 0.00298 R2N8 : 0.00231
σ : 0.633
deviance : 183.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.74 0.626 2.95 -0.0578 0.041 0.284 0.477 -1.4 0.123 6.46 91.71 708 -- --
179.67 0.624 2.94 -0.187 0.0722 0.407 -0.334 -- 0.113 13.4 92 389 -- --
178.18 0.622 2.95 -0.0724 0.0369 0.308 -- -1.19 0.121 6.45 92 710 -- --
180.13 0.625 2.94 -0.196 0.0776 0.444 -- -- 0.115 15.4 92 390 -- --
178.24 0.622 2.95 -0.0769 -- 0.333 -- -1.18 0.127 -- 92 707 -- --
182.29 0.633 2.95 -0.152 0.0871 -- -0.313 -- 0.0553 10.3 -- -- -- --
182.55 0.633 2.95 -0.166 0.105 -- -- -- 0.0532 8.39 -- -- -- --
180.37 0.626 2.94 -0.196 -- 0.421 -- -- 0.11 -- 92.21 427 -- --
181.15 0.627 2.94 -- 0.0734 0.419 -- -- 0.132 14.8 92 390 -- --
183.16 0.632 2.96 -0.166 -- -- -- -- 0.0543 -- -- -- -- --
183.28 0.633 2.95 -- 0.104 -- -- -- 0.0717 8.51 -- -- -- --
181.37 0.627 2.94 -- -- 0.417 -- -- 0.127 -- 92.59 427 -- --
183.88 0.633 2.95 -- -- -- -- -- 0.0726 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.92 temperature 10.0 1440 > th dose independent rect. 1 1
4 169.92 temperature 30.0 1440 < th dose independent rect. 1 1
8 169.92 humidity 50.0 1440 > th dose independent rect. 1 1
18 169.92 atmosphere 995.0 1440 > th dose independent rect. 1 1
19 169.92 radiation 1.0 1440 < th dose independent rect. 1 1
39 169.92 temperature 10.0 1440 > th dose independent rect. 2 23
42 169.92 radiation 1.0 1440 < th dose dependent rect. 1 1
47 170.12 wind 9.0 14400 < th dose independent rect. 1 1
48 170.14 temperature 20.0 30 > th dose dependent rect. 24 1
49 170.19 wind 3.0 30 < th dose independent rect. 24 1
50 170.22 temperature 25.0 30 > th dose independent rect. 24 1
52 170.31 humidity 90.0 30 < th dose independent rect. 24 1
54 170.39 wind 1.0 30 > th dose independent rect. 24 1
55 170.39 atmosphere 1015.0 30 < th dose dependent rect. 24 1
57 170.44 atmosphere 1010.0 30 < th dose independent rect. 24 1
59 170.50 humidity 80.0 30 > th dose independent rect. 24 1
63 170.59 wind 9.0 30 < th dose dependent rect. 24 1
68 170.61 temperature 10.0 30 > th dose independent rect. 24 1
69 170.61 temperature 30.0 30 < th dose independent rect. 24 1
70 170.61 humidity 50.0 30 > th dose independent rect. 24 1
73 170.61 atmosphere 995.0 30 > th dose independent rect. 24 1
74 170.61 radiation 1.0 30 < th dose independent rect. 24 1
79 170.61 precipitation 0.1 30 < th dose independent rect. 24 1
80 170.61 temperature 10.0 30 > th dose independent rect. 1 23
81 170.61 radiation 1.0 30 < th dose dependent rect. 24 1
86 170.61 precipitation 0.1 30 < th dose dependent rect. 24 1
91 170.75 humidity 50.0 30 > th dose dependent rect. 24 1
93 170.87 humidity 90.0 30 < th dose dependent rect. 24 1
95 170.96 atmosphere 1005.0 30 > th dose independent rect. 24 1
98 171.08 atmosphere 995.0 30 > th dose dependent rect. 24 1
102 171.50 wind 9.0 30 < th dose independent rect. 1 23
106 171.76 wind 7.0 30 > th dose dependent rect. 15 1
111 172.13 wind 1.0 30 > th dose dependent rect. 24 1
112 172.19 humidity 90.0 90 > th dose dependent rect. 2 1
114 172.39 temperature 30.0 30 < th dose dependent rect. 24 1
118 172.51 humidity 90.0 10 > th dose dependent rect. 2 2
124 172.89 temperature 20.0 10 > th dose dependent rect. 24 4
128 173.09 humidity 90.0 90 > th dose independent rect. 2 1
142 173.67 wind 3.0 270 < th dose independent rect. 24 1
157 173.68 temperature 20.0 10 > th dose independent rect. 24 4
165 173.69 temperature 20.0 270 > th dose dependent rect. 24 1
167 173.77 wind 9.0 10 > th dose independent rect. 15 1
190 173.90 wind 3.0 30 < th dose dependent rect. 24 4
195 174.02 radiation 10.0 10 < th dose independent rect. 10 3
197 174.03 wind 3.0 270 < th dose dependent rect. 24 1
198 174.04 radiation 10.0 90 < th dose dependent rect. 11 1
201 174.05 wind 3.0 30 < th dose dependent rect. 2 2
206 174.09 radiation 10.0 30 < th dose dependent rect. 10 3
219 174.23 temperature 20.0 10 > th dose independent rect. 2 2
223 174.26 wind 3.0 270 < th dose independent rect. 23 4
230 174.36 atmosphere 1015.0 1440 < th dose independent rect. 1 1
257 174.70 temperature 20.0 10 > th dose dependent rect. 24 6
261 174.74 wind 5.0 270 < th dose dependent rect. 23 4
262 174.76 wind 3.0 30 < th dose independent rect. 24 4
293 175.09 wind 9.0 270 < th dose independent rect. 1 23
319 175.26 wind 1.0 90 > th dose independent rect. 4 7
329 175.34 humidity 90.0 10 > th dose dependent rect. 2 4
334 175.37 temperature 20.0 10 > th dose dependent rect. 2 2
344 175.40 wind 1.0 30 > th dose independent rect. 1 23
354 175.45 wind 7.0 270 > th dose dependent rect. 12 1
357 175.46 atmosphere 1000.0 270 > th dose dependent rect. 24 1
363 175.49 humidity 90.0 10 > th dose dependent rect. 2 10
372 175.54 atmosphere 995.0 30 > th dose dependent rect. 24 4
381 175.58 radiation 40.0 30 < th dose independent rect. 6 18
386 175.59 temperature 10.0 1440 > th dose independent rect. 1 5
389 175.59 temperature 30.0 1440 < th dose independent rect. 1 5
393 175.59 humidity 50.0 1440 > th dose independent rect. 1 5
402 175.59 atmosphere 995.0 1440 > th dose independent rect. 1 5
403 175.59 radiation 20.0 1440 < th dose independent rect. 1 5
412 175.59 temperature 10.0 1440 > th dose independent rect. 6 19
436 175.69 precipitation 0.1 10 < th dose independent rect. 16 8
437 175.69 radiation 40.0 30 < th dose independent rect. 4 20
441 175.69 precipitation 0.1 10 < th dose dependent rect. 16 8
446 175.71 wind 3.0 10 < th dose independent rect. 24 6
447 175.71 atmosphere 995.0 30 > th dose independent rect. 24 16
450 175.71 humidity 90.0 10 > th dose dependent rect. 2 8
463 175.76 humidity 70.0 270 > th dose dependent rect. 23 4
469 175.78 atmosphere 1000.0 30 > th dose independent rect. 24 4
471 175.78 wind 9.0 270 < th dose independent rect. 13 10
476 175.80 precipitation 0.1 30 < th dose independent rect. 24 16
480 175.80 precipitation 0.1 30 < th dose dependent rect. 24 16
481 175.81 wind 9.0 30 < th dose independent rect. 16 8
485 175.82 wind 1.0 30 > th dose independent rect. 16 8
496 175.85 humidity 90.0 10 < th dose independent rect. 2 9
497 175.85 humidity 90.0 720 > th dose dependent rect. 1 2
500 175.87 temperature 15.0 30 > th dose independent rect. 24 16
501 175.87 atmosphere 1015.0 30 < th dose independent rect. 24 16
503 175.88 temperature 10.0 30 > th dose independent rect. 16 8
504 175.88 radiation 40.0 30 < th dose independent rect. 16 8
517 175.91 atmosphere 1000.0 270 > th dose independent rect. 24 1
524 175.92 radiation 40.0 30 < th dose independent rect. 4 22
535 175.96 wind 3.0 30 < th dose independent rect. 2 2
538 175.96 wind 9.0 90 < th dose independent rect. 3 23
542 175.98 temperature 25.0 90 < th dose independent rect. 2 1
560 176.03 humidity 90.0 10 > th dose independent rect. 2 4
570 176.04 wind 9.0 270 < th dose independent rect. 3 20
581 176.06 radiation 40.0 10 < th dose dependent rect. 16 8
585 176.08 humidity 50.0 30 > th dose independent rect. 24 16
596 176.12 atmosphere 1000.0 10 > th dose independent rect. 2 2
598 176.12 radiation 20.0 270 < th dose independent rect. 12 16
600 176.13 temperature 10.0 1440 > th dose independent rect. 17 8
604 176.13 radiation 30.0 1440 < th dose independent rect. 17 8
610 176.13 temperature 10.0 1440 > th dose independent rect. 1 16
618 176.16 humidity 80.0 10 > th dose independent rect. 24 4
620 176.16 humidity 90.0 270 < th dose independent rect. 2 6
621 176.16 atmosphere 995.0 30 > th dose independent rect. 16 8
641 176.22 wind 9.0 30 < th dose independent rect. 4 20
669 176.28 temperature 10.0 1440 > th dose independent rect. 6 6
672 176.28 atmosphere 995.0 1440 > th dose independent rect. 6 6
674 176.28 temperature 10.0 1440 > th dose independent rect. 12 18
678 176.28 atmosphere 995.0 90 > th dose dependent rect. 4 7
685 176.30 humidity 80.0 270 > th dose independent rect. 23 4
690 176.32 humidity 80.0 270 > th dose independent rect. 24 1
702 176.36 wind 9.0 1440 < th dose independent rect. 1 5
703 176.36 humidity 60.0 270 > th dose dependent rect. 24 1
718 176.40 humidity 80.0 10 > th dose independent rect. 24 6
723 176.41 humidity 50.0 10 > th dose independent rect. 16 8
729 176.42 atmosphere 1015.0 1440 > th dose independent rect. 12 1
732 176.42 atmosphere 1015.0 1440 > th dose dependent rect. 12 1
736 176.42 humidity 60.0 10 > th dose dependent rect. 24 4
765 176.45 wind 1.0 270 > th dose independent rect. 4 4
785 176.47 wind 1.0 30 > th dose independent rect. 16 19
786 176.47 wind 9.0 10 < th dose independent rect. 4 22
795 176.48 atmosphere 1015.0 270 < th dose independent rect. 23 14
807 176.49 wind 9.0 30 < th dose independent rect. 24 16
812 176.49 humidity 70.0 10 > th dose dependent rect. 24 6
815 176.50 atmosphere 1015.0 1440 < th dose independent rect. 13 1
823 176.51 temperature 25.0 10 < th dose independent rect. 2 2
825 176.51 precipitation 0.1 10 < th dose independent rect. 24 4
826 176.51 atmosphere 1000.0 10 > th dose independent rect. 24 6
828 176.51 precipitation 0.1 10 < th dose independent rect. 4 20
830 176.51 precipitation 0.1 10 < th dose dependent rect. 24 4
832 176.51 precipitation 0.1 10 < th dose dependent rect. 4 20
857 176.56 radiation 10.0 10 < th dose independent rect. 24 6
859 176.56 wind 9.0 270 < th dose independent rect. 4 18
866 176.57 atmosphere 1010.0 10 < th dose independent rect. 24 4
871 176.59 temperature 30.0 90 < th dose independent rect. 4 7
872 176.59 wind 9.0 10 < th dose independent rect. 6 18
883 176.61 humidity 90.0 10 > th dose independent rect. 2 10
890 176.62 temperature 10.0 270 > th dose independent rect. 13 10
891 176.62 temperature 10.0 270 > th dose independent rect. 23 14
892 176.62 atmosphere 995.0 270 > th dose independent rect. 23 14
906 176.63 temperature 30.0 10 < th dose independent rect. 24 4
907 176.63 humidity 50.0 10 > th dose independent rect. 24 4
911 176.63 radiation 1.0 10 < th dose independent rect. 24 4
918 176.63 wind 1.0 270 > th dose independent rect. 3 20
919 176.63 temperature 10.0 10 > th dose independent rect. 4 20
922 176.63 radiation 1.0 10 < th dose dependent rect. 24 4
935 176.64 precipitation 0.1 270 < th dose independent rect. 23 14
937 176.64 wind 1.0 30 > th dose independent rect. 4 20
938 176.64 precipitation 0.1 270 < th dose dependent rect. 23 14
941 176.65 precipitation 0.1 30 < th dose independent rect. 1 23
945 176.65 precipitation 0.1 30 < th dose dependent rect. 1 23
946 176.66 precipitation 0.1 270 < th dose independent rect. 24 1
949 176.66 atmosphere 1000.0 270 > th dose independent rect. 23 4
950 176.66 atmosphere 1010.0 270 < th dose independent rect. 23 4
952 176.66 precipitation 0.1 270 < th dose dependent rect. 24 1
967 176.67 wind 1.0 270 > th dose independent rect. 16 16
976 176.68 atmosphere 1010.0 270 < th dose independent rect. 24 1
982 176.69 temperature 10.0 270 > th dose independent rect. 24 1
984 176.69 temperature 30.0 270 < th dose independent rect. 24 1
985 176.69 humidity 50.0 270 > th dose independent rect. 24 1
990 176.69 radiation 1.0 270 < th dose independent rect. 24 1
999 176.69 temperature 10.0 270 > th dose independent rect. 1 23