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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0559100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C6HC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.046) R2 : 0.0357
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.398 (0.0968) R2dN8 : 0.0461 R2N8 : 0.0357
σ : 0.866
deviance : 344.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.23 0.846 3.45 -1.78 0.13 9.49 0.839 -49.6 -0.36 11.3 1001 10 -- --
331.88 0.855 3.16 -0.115 0.127 0.998 0.717 -- -0.365 11.2 1001 10 -- --
327.24 0.843 3.45 -1.73 0.128 9.44 -- -49.2 -0.354 11 1001 10 -- --
332.1 0.849 3.13 -0.0582 0.167 1.03 -- -- -0.254 10.6 1017 291 -- --
328.22 0.844 3.43 -1.62 -- 8.82 -- -45.7 -0.358 -- 1001 10 -- --
341.1 0.866 3.17 -0.0272 0.133 -- 0.724 -- -0.4 11.3 -- -- -- --
343.36 0.868 3.17 0.00223 0.129 -- -- -- -0.397 11.3 -- -- -- --
333.8 0.851 3.14 -0.0569 -- 0.993 -- -- -0.266 -- 1033 118 -- --
332.18 0.849 3.13 -- 0.176 1 -- -- -0.256 10.6 1050 285 -- --
344.41 0.867 3.17 -0.00101 -- -- -- -- -0.398 -- -- -- -- --
343.36 0.867 3.17 -- 0.129 -- -- -- -0.397 11.3 -- -- -- --
333.89 0.851 3.14 -- -- 0.985 -- -- -0.26 -- 1062 115 -- --
344.41 0.866 3.17 -- -- -- -- -- -0.398 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 320.39 wind 9 14400 > th dose independent rect. 11 2
2 320.43 wind 9 14400 > th dose independent rect. 10 5
3 320.65 wind 9 14400 > th dose independent rect. 7 8
17 321.10 wind 9 14400 < th dose independent rect. 10 5
18 321.15 wind 9 14400 > th dose dependent rect. 10 5
20 321.18 atmosphere 1005 1440 < th dose independent rect. 9 1
28 321.34 atmosphere 1005 1440 > th dose independent rect. 9 1
35 321.40 wind 9 14400 < th dose independent rect. 11 2
43 321.42 wind 1 90 < th dose independent rect. 6 3
53 321.62 wind 9 14400 < th dose independent rect. 7 8
57 321.68 humidity 90 10 < th dose independent rect. 1 7
67 321.80 wind 1 90 < th dose dependent rect. 6 3
95 322.12 wind 9 14400 < th dose independent rect. 24 16
109 322.24 wind 9 14400 > th dose independent sin 3 NA
146 322.54 wind 9 14400 > th dose dependent sin 2 NA
158 322.65 atmosphere 995 270 > th dose independent rect. 6 23
165 322.76 humidity 90 10 < th dose independent rect. 4 4
175 322.86 wind 1 1440 < th dose dependent rect. 8 4
177 322.88 atmosphere 1000 10 < th dose dependent rect. 17 22
187 322.98 wind 9 14400 > th dose dependent rect. 20 20
248 323.44 wind 7 90 < th dose independent rect. 8 9
257 323.46 wind 9 14400 < th dose independent sin 3 NA
323 323.97 atmosphere 1000 10 < th dose dependent rect. 17 16
332 324.08 wind 1 1440 < th dose independent rect. 8 4
441 324.77 atmosphere 1005 30 < th dose dependent rect. 11 21
444 324.78 atmosphere 1005 30 < th dose dependent rect. 4 20
461 324.83 wind 1 1440 > th dose independent rect. 8 4
475 324.93 atmosphere 995 90 > th dose independent rect. 8 21
493 325.03 radiation 10 10 > th dose independent rect. 7 1
502 325.07 wind 7 90 < th dose independent rect. 8 21
503 325.09 atmosphere 1000 1440 < th dose independent rect. 20 6
541 325.20 temperature 25 10 < th dose independent rect. 4 23
566 325.31 atmosphere 1000 1440 > th dose independent rect. 22 1
586 325.40 wind 1 1440 > th dose independent rect. 8 1
608 325.49 atmosphere 1005 30 < th dose dependent rect. 4 17
610 325.50 atmosphere 1015 90 < th dose dependent rect. 17 15
613 325.53 wind 9 90 < th dose dependent rect. 8 21
632 325.59 humidity 50 90 > th dose independent rect. 17 15
638 325.60 temperature 25 10 < th dose independent rect. 4 19
642 325.62 wind 9 90 < th dose dependent rect. 8 9
674 325.78 atmosphere 1000 270 < th dose dependent rect. 13 19
714 325.86 atmosphere 1000 270 < th dose dependent rect. 1 20
736 325.93 atmosphere 1000 270 < th dose dependent rect. 23 22
745 325.96 wind 5 10 > th dose dependent rect. 17 2
751 325.97 wind 5 10 < th dose independent rect. 8 23
803 326.09 atmosphere 995 4320 > th dose independent rect. 6 3
835 326.16 atmosphere 1015 90 < th dose dependent rect. 5 3
842 326.17 humidity 80 90 > th dose dependent rect. 22 7
915 326.28 atmosphere 1005 30 < th dose dependent rect. 22 23
932 326.32 atmosphere 995 270 > th dose independent rect. 7 10
939 326.33 atmosphere 1000 1440 > th dose independent rect. 20 7
959 326.36 atmosphere 1005 1440 < th dose dependent rect. 4 1
968 326.38 radiation 1 90 > th dose independent rect. 18 14
969 326.38 atmosphere 1000 10 < th dose dependent no NA NA
970 326.38 atmosphere 1000 270 < th dose dependent no NA NA
982 326.40 temperature 25 90 < th dose independent rect. 4 18
992 326.41 wind 5 10 < th dose independent rect. 9 20