Os09g0558600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0558600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 227.39 | 0.708 | 2.98 | -0.129 | 0.0294 | 23.5 | 0.307 | -87.5 | -0.0615 | 7.05 | 1.993 | 62 | -- | -- |
| 299.65 | 0.806 | 2.97 | 0.263 | 0.0195 | 6.97 | -1.12 | -- | -0.78 | 11.8 | 1.709 | 134 | -- | -- |
| 227.51 | 0.703 | 2.98 | -0.122 | 0.0527 | 23.6 | -- | -88.1 | -0.0609 | 10.9 | 1.868 | 123 | -- | -- |
| 231.21 | 0.708 | 2.92 | 0.129 | 0.0624 | 3.88 | -- | -- | -0.0595 | 9.79 | 1.612 | 155 | -- | -- |
| 227.68 | 0.703 | 2.98 | -0.127 | -- | 23.8 | -- | -89.2 | -0.062 | -- | 1.93 | 132 | -- | -- |
| 248 | 0.738 | 2.92 | 0.172 | 0.0583 | -- | -0.0281 | -- | -0.0686 | 14.2 | -- | -- | -- | -- |
| 248 | 0.737 | 2.92 | 0.171 | 0.058 | -- | -- | -- | -0.0688 | 14 | -- | -- | -- | -- |
| 231.43 | 0.709 | 2.92 | 0.127 | -- | 3.85 | -- | -- | -0.06 | -- | 1.63 | 146 | -- | -- |
| 231.63 | 0.709 | 2.92 | -- | 0.0614 | 3.9 | -- | -- | -0.0738 | 10.4 | 1.86 | 139 | -- | -- |
| 248.2 | 0.736 | 2.92 | 0.169 | -- | -- | -- | -- | -0.0702 | -- | -- | -- | -- | -- |
| 248.78 | 0.738 | 2.92 | -- | 0.0549 | -- | -- | -- | -0.0879 | 13.9 | -- | -- | -- | -- |
| 231.86 | 0.709 | 2.92 | -- | -- | 3.88 | -- | -- | -0.0739 | -- | 1.813 | 135 | -- | -- |
| 248.96 | 0.736 | 2.92 | -- | -- | -- | -- | -- | -0.0889 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 226.83 | radiation | 1e+00 | 90 | < th | dose independent | rect. | 14 | 1 |
| 2 | 226.83 | radiation | 1e+00 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 3 | 227.19 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 4 | 227.25 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 16 | 3 |
| 12 | 227.39 | precipitation | 1e-01 | 10 | > th | dose independent | rect. | 17 | 1 |
| 41 | 227.39 | precipitation | 1e-01 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 111 | 228.29 | atmosphere | 1e+03 | 90 | < th | dose independent | rect. | 16 | 1 |
| 120 | 228.51 | humidity | 8e+01 | 90 | < th | dose independent | rect. | 23 | 2 |
| 124 | 228.64 | humidity | 8e+01 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 130 | 229.44 | temperature | 3e+01 | 30 | > th | dose dependent | rect. | 18 | 16 |
| 142 | 229.75 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 145 | 229.80 | precipitation | 1e-01 | 10 | > th | dose independent | rect. | 17 | 6 |
| 155 | 229.80 | precipitation | 1e-01 | 10 | > th | dose dependent | rect. | 17 | 6 |
| 166 | 229.87 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 211 | 229.94 | temperature | 3e+01 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 316 | 230.29 | temperature | 3e+01 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 347 | 230.30 | temperature | 3e+01 | 90 | > th | dose independent | rect. | 8 | 1 |
| 398 | 230.49 | precipitation | 1e-01 | 10 | > th | dose independent | sin | 20 | NA |
| 399 | 230.49 | precipitation | 1e-01 | 10 | > th | dose dependent | sin | 20 | NA |
| 403 | 230.69 | precipitation | 1e-01 | 10 | < th | dose independent | sin | 20 | NA |
| 404 | 230.69 | precipitation | 1e-01 | 10 | < th | dose dependent | sin | 20 | NA |
| 405 | 230.72 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 16 | 12 |
| 406 | 230.77 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 409 | 230.89 | humidity | 8e+01 | 30 | < th | dose independent | rect. | 23 | 6 |
| 421 | 230.98 | temperature | 3e+01 | 90 | > th | dose independent | rect. | 18 | 16 |
| 502 | 232.13 | humidity | 8e+01 | 30 | < th | dose dependent | rect. | 23 | 8 |
| 518 | 232.63 | wind | 5e+00 | 10 | > th | dose independent | rect. | 23 | 1 |
| 587 | 233.15 | wind | 5e+00 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 643 | 233.78 | precipitation | 1e-01 | 30 | < th | dose independent | sin | 0 | NA |
| 644 | 233.78 | precipitation | 1e-01 | 30 | < th | dose dependent | sin | 0 | NA |
| 645 | 233.82 | precipitation | 1e-01 | 30 | > th | dose independent | sin | 0 | NA |
| 688 | 234.63 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 23 | 19 |
| 723 | 235.03 | precipitation | 1e-01 | 90 | > th | dose dependent | sin | 0 | NA |
| 724 | 235.03 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 16 | 9 |
| 750 | 235.29 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 20 | 22 |
| 784 | 235.54 | wind | 5e+00 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 845 | 235.92 | precipitation | 1e-01 | 90 | > th | dose dependent | no | NA | NA |
| 879 | 236.29 | radiation | 1e+00 | 270 | < th | dose independent | rect. | 11 | 5 |
| 897 | 236.59 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 16 | 12 |
| 983 | 237.61 | wind | 5e+00 | 10 | > th | dose independent | rect. | 3 | 5 |
| 998 | 237.68 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 9 | 1 |