Os09g0557600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0557600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.64 | 0.264 | 10.2 | 1.09 | 0.324 | 0.55 | -0.0882 | -0.965 | 0.108 | 0.00627 | 93 | 494 | -- | -- |
| 32.7 | 0.266 | 10.2 | 1.04 | 0.332 | 0.585 | 0.136 | -- | 0.109 | 23.5 | 92.62 | 488 | -- | -- |
| 31.67 | 0.262 | 10.2 | 1.08 | 0.321 | 0.566 | -- | -0.937 | 0.107 | 23.9 | 93 | 474 | -- | -- |
| 32.76 | 0.267 | 10.2 | 1.02 | 0.323 | 0.564 | -- | -- | 0.106 | 23.6 | 92.56 | 474 | -- | -- |
| 36.98 | 0.283 | 10.2 | 1.06 | -- | 0.527 | -- | -0.908 | 0.104 | -- | 92.58 | 345 | -- | -- |
| 36.3 | 0.282 | 10.2 | 1.05 | 0.3 | -- | -0.0153 | -- | 0.0302 | 1.43 | -- | -- | -- | -- |
| 36.3 | 0.282 | 10.2 | 1.06 | 0.3 | -- | -- | -- | 0.0303 | 1.42 | -- | -- | -- | -- |
| 37.86 | 0.287 | 10.2 | 1.03 | -- | 0.423 | -- | -- | 0.0958 | -- | 91.19 | 318 | -- | -- |
| 59.42 | 0.359 | 10.2 | -- | 0.319 | 0.638 | -- | -- | 0.0238 | 22.8 | 90.5 | 406 | -- | -- |
| 41.83 | 0.302 | 10.2 | 1.07 | -- | -- | -- | -- | 0.0367 | -- | -- | -- | -- | -- |
| 65.63 | 0.379 | 10.2 | -- | 0.319 | -- | -- | -- | -0.0872 | 1.53 | -- | -- | -- | -- |
| 64.81 | 0.375 | 10.2 | -- | -- | 0.475 | -- | -- | -0.000366 | -- | 89 | 276 | -- | -- |
| 71.86 | 0.396 | 10.2 | -- | -- | -- | -- | -- | -0.0817 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 6 | 31.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 67 | 32.26 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 84 | 32.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 88 | 32.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 95 | 32.35 | humidity | 90 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 120 | 32.39 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 122 | 32.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 126 | 32.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 138 | 32.41 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 241 | 32.49 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 252 | 32.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 255 | 32.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 273 | 32.53 | humidity | 90 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 300 | 32.55 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 331 | 32.61 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 336 | 32.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 396 | 32.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 399 | 32.71 | humidity | 90 | 720 | > th | dose dependent | sin | 11 | NA |
| 413 | 32.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 418 | 32.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 430 | 32.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 431 | 32.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 446 | 32.78 | humidity | 90 | 720 | > th | dose dependent | no | NA | NA |
| 469 | 32.80 | humidity | 90 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 477 | 32.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 492 | 32.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 496 | 32.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 523 | 32.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 22 |
| 546 | 32.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 599 | 32.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 630 | 32.94 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 646 | 32.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 667 | 32.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 672 | 32.99 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 751 | 33.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 808 | 33.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 8 |
| 838 | 33.12 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 858 | 33.15 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 14 |
| 868 | 33.16 | wind | 7 | 720 | < th | dose independent | rect. | 8 | 10 |
| 887 | 33.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 907 | 33.18 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 21 |
| 951 | 33.19 | wind | 7 | 720 | < th | dose independent | rect. | 6 | 14 |
| 953 | 33.19 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |