Os09g0557500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0557500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.18 | 0.48 | 9.59 | -0.229 | 0.308 | 2.41 | -1.99 | -1.89 | -0.233 | 17.6 | 25.6 | 1390 | -- | -- |
| 108.02 | 0.484 | 9.54 | 0.341 | 0.225 | 2.35 | -2.16 | -- | -0.119 | 17.3 | 25.41 | 1439 | -- | -- |
| 113.37 | 0.496 | 9.59 | -0.225 | 0.278 | 2.45 | -- | -1.86 | -0.204 | 16.8 | 25.74 | 1385 | -- | -- |
| 116.25 | 0.502 | 9.53 | 0.306 | 0.312 | 2.34 | -- | -- | -0.0567 | 16.7 | 25.63 | 1370 | -- | -- |
| 116.19 | 0.502 | 9.58 | -0.19 | -- | 2.4 | -- | -1.73 | -0.195 | -- | 25.8 | 1463 | -- | -- |
| 267.68 | 0.767 | 9.34 | 1.09 | 0.132 | -- | -2.06 | -- | 0.755 | 18 | -- | -- | -- | -- |
| 277.37 | 0.78 | 9.35 | 1.11 | 0.161 | -- | -- | -- | 0.746 | 20.8 | -- | -- | -- | -- |
| 118.92 | 0.508 | 9.52 | 0.304 | -- | 2.3 | -- | -- | -0.0557 | -- | 25.7 | 1490 | -- | -- |
| 119.12 | 0.508 | 9.53 | -- | 0.274 | 2.39 | -- | -- | -0.0817 | 16.9 | 25.8 | 1392 | -- | -- |
| 278.84 | 0.78 | 9.34 | 1.11 | -- | -- | -- | -- | 0.745 | -- | -- | -- | -- | -- |
| 309.67 | 0.823 | 9.37 | -- | 0.16 | -- | -- | -- | 0.623 | 21.3 | -- | -- | -- | -- |
| 121.51 | 0.513 | 9.53 | -- | -- | 2.38 | -- | -- | -0.0778 | -- | 25.7 | 1482 | -- | -- |
| 311.15 | 0.823 | 9.37 | -- | -- | -- | -- | -- | 0.622 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 2 | 106.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 20 |
| 8 | 107.60 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 20 |
| 11 | 107.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 24 | 108.21 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 40 | 108.48 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 46 | 108.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 53 | 108.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 55 | 108.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 62 | 108.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 80 | 109.03 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 97 | 109.21 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 105 | 109.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 132 | 109.61 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 161 | 109.97 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 192 | 110.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 201 | 110.36 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 266 | 110.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 295 | 111.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 339 | 111.51 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 345 | 111.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 349 | 111.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 377 | 111.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 409 | 111.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 426 | 112.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 666 | 113.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 676 | 113.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 688 | 113.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 762 | 113.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 798 | 113.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 818 | 113.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 819 | 113.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 866 | 114.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |