Os09g0557300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0557300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.84 | 0.304 | 2.77 | 0.13 | 0.123 | 0.257 | -0.562 | -0.981 | 0.157 | 13.8 | 27.8 | 9 | -- | -- |
| 42.87 | 0.307 | 2.78 | -0.0425 | 0.139 | 0.301 | -0.19 | -- | 0.118 | 13.2 | 27.28 | 5 | -- | -- |
| 42.61 | 0.304 | 2.77 | 0.0338 | 0.131 | 0.279 | -- | -0.504 | 0.137 | 12.9 | 27.6 | 2 | -- | -- |
| 43.01 | 0.307 | 2.78 | -0.0492 | 0.14 | 0.302 | -- | -- | 0.117 | 12.8 | 27.41 | 4 | -- | -- |
| 43.36 | 0.308 | 2.79 | -0.0146 | -- | 0.199 | -- | -0.419 | 0.0998 | -- | 24.1 | 2 | -- | -- |
| 44.2 | 0.312 | 2.8 | -0.113 | 0.0465 | -- | -0.242 | -- | 0.053 | 14 | -- | -- | -- | -- |
| 44.33 | 0.312 | 2.8 | -0.121 | 0.0593 | -- | -- | -- | 0.051 | 11.1 | -- | -- | -- | -- |
| 43.34 | 0.308 | 2.79 | -0.0588 | -- | 0.404 | -- | -- | 0.0788 | -- | 20.51 | 4 | -- | -- |
| 43.07 | 0.307 | 2.78 | -- | 0.147 | 0.322 | -- | -- | 0.126 | 12.9 | 27.44 | 4 | -- | -- |
| 44.55 | 0.312 | 2.8 | -0.122 | -- | -- | -- | -- | 0.0505 | -- | -- | -- | -- | -- |
| 44.72 | 0.313 | 2.8 | -- | 0.0604 | -- | -- | -- | 0.0644 | 11.2 | -- | -- | -- | -- |
| 43.39 | 0.307 | 2.79 | -- | -- | 0.45 | -- | -- | 0.0865 | -- | 20.41 | 26 | -- | -- |
| 44.95 | 0.313 | 2.8 | -- | -- | -- | -- | -- | 0.064 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.45 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 2 | 36.48 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 6 | 37.07 | temperature | 20.0 | 90 | < th | dose independent | rect. | 12 | 4 |
| 20 | 38.78 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 21 | 38.78 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 23 | 38.99 | temperature | 20.0 | 90 | < th | dose independent | rect. | 14 | 2 |
| 24 | 38.99 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 25 | 38.99 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 73 | 39.49 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 86 | 39.56 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 120 | 40.08 | radiation | 1.0 | 270 | < th | dose independent | rect. | 10 | 5 |
| 121 | 40.08 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 154 | 40.37 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 11 |
| 173 | 40.47 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 202 | 40.57 | temperature | 20.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 249 | 40.74 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 11 | 6 |
| 253 | 40.75 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 281 | 40.85 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 301 | 40.91 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 399 | 41.03 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 453 | 41.11 | temperature | 20.0 | 90 | < th | dose independent | sin | 22 | NA |
| 462 | 41.12 | temperature | 15.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 470 | 41.12 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 492 | 41.14 | temperature | 20.0 | 90 | > th | dose independent | sin | 22 | NA |
| 564 | 41.21 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 12 |
| 588 | 41.24 | temperature | 15.0 | 10 | > th | dose dependent | sin | 20 | NA |
| 601 | 41.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 9 |
| 627 | 41.27 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 10 | 17 |
| 656 | 41.29 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 748 | 41.36 | atmosphere | 1010.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 816 | 41.40 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 899 | 41.45 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 954 | 41.50 | temperature | 20.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 956 | 41.50 | humidity | 90.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 957 | 41.50 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 10 | 1 |
| 959 | 41.50 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 2 |
| 966 | 41.50 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 967 | 41.50 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 970 | 41.50 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 2 |
| 985 | 41.51 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 993 | 41.51 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 10 |