Os09g0556500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cysteinyl-tRNA synthetase, class Ia family protein.
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Os09g0556500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cysteinyl-tRNA synthetase, class Ia family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.15 | 0.449 | 9.47 | -0.177 | 0.966 | 0.823 | 0.306 | 2.02 | -0.549 | 21.9 | 25.32 | 79 | -- | -- |
| 92.67 | 0.448 | 9.49 | -0.354 | 0.957 | 0.941 | 0.146 | -- | -0.586 | 21.9 | 25.69 | 78 | -- | -- |
| 91.48 | 0.445 | 9.47 | -0.208 | 0.967 | 0.831 | -- | 1.88 | -0.553 | 21.9 | 25.4 | 79 | -- | -- |
| 92.68 | 0.448 | 9.49 | -0.392 | 0.977 | 0.985 | -- | -- | -0.58 | 21.8 | 25.9 | 71 | -- | -- |
| 123.63 | 0.518 | 9.47 | -0.357 | -- | 1.09 | -- | 0.946 | -0.617 | -- | 24.52 | 668 | -- | -- |
| 108.85 | 0.489 | 9.48 | -0.248 | 1.01 | -- | 0.366 | -- | -0.544 | 20.4 | -- | -- | -- | -- |
| 109.27 | 0.49 | 9.48 | -0.26 | 1.01 | -- | -- | -- | -0.544 | 20.5 | -- | -- | -- | -- |
| 124.15 | 0.519 | 9.48 | -0.51 | -- | 1.22 | -- | -- | -0.662 | -- | 24.5 | 651 | -- | -- |
| 96.98 | 0.459 | 9.48 | -- | 0.977 | 0.93 | -- | -- | -0.531 | 21.7 | 26.1 | 66 | -- | -- |
| 166.07 | 0.602 | 9.46 | -0.264 | -- | -- | -- | -- | -0.553 | -- | -- | -- | -- | -- |
| 111.05 | 0.493 | 9.48 | -- | 1.01 | -- | -- | -- | -0.515 | 20.5 | -- | -- | -- | -- |
| 130.67 | 0.532 | 9.47 | -- | -- | 1.12 | -- | -- | -0.597 | -- | 24.6 | 636 | -- | -- |
| 167.91 | 0.605 | 9.45 | -- | -- | -- | -- | -- | -0.524 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.49 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 3 | 83.52 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 13 | 83.86 | temperature | 25 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 27 | 84.01 | temperature | 25 | 14400 | < th | dose dependent | rect. | 3 | 19 |
| 33 | 84.05 | temperature | 25 | 14400 | < th | dose dependent | rect. | 4 | 8 |
| 75 | 84.14 | temperature | 25 | 14400 | < th | dose dependent | sin | 2 | NA |
| 107 | 84.20 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 116 | 84.20 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 22 |
| 122 | 84.21 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 152 | 84.24 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 170 | 84.27 | temperature | 25 | 14400 | < th | dose dependent | sin | 17 | NA |
| 227 | 84.35 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 14 |
| 260 | 84.39 | temperature | 10 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 262 | 84.39 | temperature | 10 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 554 | 84.82 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 792 | 85.02 | temperature | 10 | 14400 | > th | dose dependent | rect. | 3 | 19 |
| 796 | 85.03 | temperature | 10 | 14400 | > th | dose dependent | sin | 4 | NA |
| 846 | 85.06 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 899 | 85.09 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 969 | 85.14 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 982 | 85.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 2 |