Os09g0556300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0556300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.95 | 0.448 | 11.3 | 1.57 | 2.58 | 0.952 | 1.15 | -0.623 | 0.257 | 17.7 | 22.3 | 89 | -- | -- |
| 91.21 | 0.445 | 11.3 | 1.67 | 2.58 | 0.918 | 1.02 | -- | 0.282 | 17.7 | 22.3 | 90 | -- | -- |
| 93.77 | 0.451 | 11.3 | 1.66 | 2.56 | 0.952 | -- | 0.00443 | 0.295 | 17.7 | 22.8 | 90 | -- | -- |
| 93.77 | 0.451 | 11.3 | 1.66 | 2.56 | 0.953 | -- | -- | 0.295 | 17.7 | 22.8 | 90 | -- | -- |
| 287.93 | 0.79 | 11.3 | 0.873 | -- | 3.19 | -- | -3.34 | 0.165 | -- | 24.5 | 340 | -- | -- |
| 104.79 | 0.48 | 11.3 | 1.86 | 2.89 | -- | 1.32 | -- | 0.433 | 17.4 | -- | -- | -- | -- |
| 109.09 | 0.489 | 11.3 | 1.85 | 2.9 | -- | -- | -- | 0.439 | 17.4 | -- | -- | -- | -- |
| 292.76 | 0.797 | 11.3 | 1.27 | -- | 2.97 | -- | -- | 0.0916 | -- | 24.36 | 314 | -- | -- |
| 156.85 | 0.583 | 11.4 | -- | 2.37 | 1.9 | -- | -- | 0.0164 | 17.9 | 14.7 | 148 | -- | -- |
| 545.67 | 1.09 | 11.2 | 1.76 | -- | -- | -- | -- | 0.368 | -- | -- | -- | -- | -- |
| 199.67 | 0.661 | 11.3 | -- | 2.87 | -- | -- | -- | 0.233 | 17.5 | -- | -- | -- | -- |
| 334.19 | 0.851 | 11.3 | -- | -- | 3.15 | -- | -- | -0.0836 | -- | 24.2 | 314 | -- | -- |
| 627.09 | 1.17 | 11.3 | -- | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 6 | 83.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 42 | 85.83 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 57 | 86.28 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 13 |
| 70 | 86.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 13 |
| 76 | 86.75 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 82 | 86.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 99 | 87.07 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 18 |
| 111 | 87.26 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 120 | 87.33 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 121 | 87.35 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 17 |
| 123 | 87.36 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 128 | 87.44 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 144 | 87.56 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 159 | 87.85 | wind | 5 | 14400 | > th | dose dependent | sin | 5 | NA |
| 169 | 87.94 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 170 | 87.95 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 172 | 88.00 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 174 | 88.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 178 | 88.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 179 | 88.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 22 |
| 188 | 88.12 | wind | 5 | 14400 | > th | dose dependent | rect. | 2 | 13 |
| 191 | 88.13 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 198 | 88.18 | wind | 5 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 215 | 88.27 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 234 | 88.39 | wind | 7 | 14400 | > th | dose independent | sin | 6 | NA |
| 244 | 88.46 | wind | 7 | 14400 | < th | dose independent | sin | 6 | NA |
| 249 | 88.51 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 254 | 88.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 266 | 88.55 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 268 | 88.57 | wind | 5 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 303 | 88.70 | wind | 5 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 329 | 88.77 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 362 | 88.87 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 372 | 88.90 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 388 | 88.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 404 | 88.99 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 438 | 89.10 | wind | 9 | 14400 | > th | dose dependent | sin | 8 | NA |
| 457 | 89.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 16 |
| 463 | 89.17 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 464 | 89.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 23 |
| 471 | 89.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 18 |
| 505 | 89.29 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 12 |
| 543 | 89.37 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 545 | 89.38 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 555 | 89.40 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 560 | 89.41 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 569 | 89.43 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 601 | 89.48 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 650 | 89.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 659 | 89.59 | humidity | 80 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 672 | 89.61 | wind | 9 | 14400 | > th | dose dependent | rect. | 14 | 21 |
| 692 | 89.66 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 705 | 89.68 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 19 |
| 715 | 89.69 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 725 | 89.71 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 730 | 89.72 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 797 | 89.83 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 20 |
| 801 | 89.83 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 21 |
| 837 | 89.91 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 890 | 90.02 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 907 | 90.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 916 | 90.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 953 | 90.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 962 | 90.17 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 963 | 90.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 973 | 90.19 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 8 |