Os09g0555800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AMP-binding protein (Adenosine monophosphate binding protein 6 AMPBP6).
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Os09g0555800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AMP-binding protein (Adenosine monophosphate binding protein 6 AMPBP6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.54 | 0.419 | 3.16 | 0.376 | 0.0908 | -1.05 | 0.31 | 4.33 | -0.00877 | 8.67 | 50 | 4157 | -- | -- |
| 83.77 | 0.426 | 3.22 | 0.283 | 0.139 | 0.511 | -0.0691 | -- | 0.0455 | 10 | 51.99 | 9006 | -- | -- |
| 79.81 | 0.416 | 3.16 | 0.377 | 0.0918 | -0.981 | -- | 4.14 | -0.00652 | 9.95 | 50 | 4159 | -- | -- |
| 81.67 | 0.421 | 3.24 | 0.181 | 0.11 | 0.568 | -- | -- | 0.013 | 8.78 | 45.4 | 8962 | -- | -- |
| 80.31 | 0.417 | 3.16 | 0.391 | -- | -1.07 | -- | 4.32 | -0.0113 | -- | 50 | 4159 | -- | -- |
| 87.21 | 0.438 | 3.24 | 0.351 | 0.09 | -- | 0.182 | -- | -0.0113 | 8.8 | -- | -- | -- | -- |
| 87.27 | 0.437 | 3.24 | 0.359 | 0.0919 | -- | -- | -- | -0.0105 | 10.1 | -- | -- | -- | -- |
| 82.18 | 0.422 | 3.24 | 0.177 | -- | 0.552 | -- | -- | 0.0141 | -- | 45.22 | 8951 | -- | -- |
| 82.32 | 0.423 | 3.24 | -- | 0.102 | 0.614 | -- | -- | -0.00457 | 8.83 | 44.45 | 8942 | -- | -- |
| 87.78 | 0.438 | 3.24 | 0.357 | -- | -- | -- | -- | -0.0106 | -- | -- | -- | -- | -- |
| 90.66 | 0.445 | 3.25 | -- | 0.0905 | -- | -- | -- | -0.0504 | 9.83 | -- | -- | -- | -- |
| 82.86 | 0.424 | 3.24 | -- | -- | 0.611 | -- | -- | -0.00093 | -- | 44.42 | 8942 | -- | -- |
| 91.15 | 0.446 | 3.25 | -- | -- | -- | -- | -- | -0.0503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.60 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 4 | 75.60 | wind | 9.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 13 | 77.09 | wind | 9.0 | 90 | > th | dose independent | rect. | 17 | 9 |
| 58 | 77.18 | wind | 9.0 | 90 | > th | dose dependent | sin | 13 | NA |
| 60 | 77.21 | wind | 9.0 | 90 | > th | dose independent | sin | 12 | NA |
| 65 | 77.40 | wind | 9.0 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 67 | 77.41 | wind | 9.0 | 90 | > th | dose independent | rect. | 13 | 5 |
| 217 | 77.85 | wind | 9.0 | 90 | < th | dose independent | sin | 12 | NA |
| 224 | 79.02 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 16 | 21 |
| 226 | 79.20 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 227 | 79.30 | humidity | 50.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 228 | 79.39 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 16 | 21 |
| 233 | 79.68 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 237 | 79.80 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 10 | 3 |
| 257 | 79.89 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 260 | 79.90 | wind | 7.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 267 | 79.90 | wind | 7.0 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 283 | 79.91 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 284 | 79.91 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 286 | 79.91 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 9 | 8 |
| 303 | 79.92 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 321 | 79.92 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 340 | 79.93 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 21 | 2 |
| 341 | 79.93 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 345 | 79.96 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 9 | 4 |
| 349 | 79.96 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 3 | 8 |
| 373 | 80.02 | humidity | 50.0 | 4320 | < th | dose independent | sin | 5 | NA |
| 416 | 80.10 | humidity | 50.0 | 4320 | < th | dose dependent | no | NA | NA |
| 553 | 80.11 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 22 | 22 |
| 555 | 80.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 5 | 8 |
| 556 | 80.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 24 | 13 |
| 558 | 80.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 561 | 80.13 | humidity | 70.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 585 | 80.14 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 594 | 80.16 | wind | 7.0 | 720 | > th | dose independent | rect. | 21 | 4 |
| 601 | 80.18 | wind | 1.0 | 10 | < th | dose independent | rect. | 15 | 7 |
| 602 | 80.18 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 620 | 80.19 | wind | 1.0 | 10 | < th | dose independent | rect. | 17 | 5 |
| 632 | 80.21 | wind | 1.0 | 10 | < th | dose dependent | rect. | 17 | 5 |
| 652 | 80.22 | humidity | 50.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 654 | 80.22 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 659 | 80.22 | wind | 1.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 674 | 80.25 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 682 | 80.30 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 685 | 80.32 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 688 | 80.34 | wind | 5.0 | 720 | < th | dose independent | rect. | 22 | 7 |
| 756 | 80.46 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 780 | 80.47 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 784 | 80.48 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 787 | 80.49 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 810 | 80.53 | humidity | 50.0 | 4320 | < th | dose independent | no | NA | NA |
| 949 | 80.54 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 963 | 80.57 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 979 | 80.58 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |