Os09g0555700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0555700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, C2H2-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.7 | 0.411 | 10.5 | -0.917 | 0.777 | -1.67 | -0.666 | -0.388 | 0.29 | 7.74 | 10.42 | 106 | -- | -- |
| 76.81 | 0.408 | 10.5 | -0.863 | 0.77 | -1.69 | -0.66 | -- | 0.306 | 7.73 | 9.544 | 112 | -- | -- |
| 77.92 | 0.411 | 10.5 | -0.944 | 0.784 | -1.62 | -- | -0.377 | 0.284 | 7.58 | 9.459 | 107 | -- | -- |
| 78.03 | 0.411 | 10.5 | -0.891 | 0.785 | -1.63 | -- | -- | 0.298 | 7.57 | 9.044 | 108 | -- | -- |
| 96.92 | 0.459 | 10.5 | -0.717 | -- | -2.11 | -- | 0.256 | 0.398 | -- | 6.282 | 359 | -- | -- |
| 103.89 | 0.478 | 10.5 | -1.22 | 1.07 | -- | 0.0105 | -- | 0.0722 | 6.05 | -- | -- | -- | -- |
| 103.89 | 0.477 | 10.5 | -1.22 | 1.07 | -- | -- | -- | 0.0721 | 6.05 | -- | -- | -- | -- |
| 96.96 | 0.459 | 10.5 | -0.757 | -- | -2.1 | -- | -- | 0.386 | -- | 8.096 | 355 | -- | -- |
| 96.82 | 0.458 | 10.5 | -- | 0.719 | -2.01 | -- | -- | 0.444 | 8.2 | 14.7 | 116 | -- | -- |
| 163.16 | 0.597 | 10.6 | -1.19 | -- | -- | -- | -- | 0.0963 | -- | -- | -- | -- | -- |
| 143.42 | 0.56 | 10.5 | -- | 1.05 | -- | -- | -- | 0.209 | 6.11 | -- | -- | -- | -- |
| 110.99 | 0.491 | 10.5 | -- | -- | -2.34 | -- | -- | 0.504 | -- | 14.8 | 363 | -- | -- |
| 200.76 | 0.661 | 10.5 | -- | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 2 | 64.57 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 28 | 68.60 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 17 |
| 49 | 69.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 54 | 70.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 58 | 70.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 143 | 72.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 151 | 72.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 185 | 73.24 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 195 | 73.35 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 203 | 73.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 206 | 73.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 221 | 73.74 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 265 | 74.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 293 | 74.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 301 | 74.77 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 345 | 75.23 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 382 | 75.60 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 408 | 75.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 536 | 76.58 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 9 |
| 544 | 76.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 573 | 76.82 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 598 | 76.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 607 | 77.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 757 | 77.85 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 772 | 77.94 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 8 |
| 819 | 78.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 826 | 78.18 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 848 | 78.30 | temperature | 10 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 900 | 78.48 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |