Os09g0555600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MORN motif repeat containing protein.
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Os09g0555600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MORN motif repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.94 | 0.472 | 7.15 | -1.31 | 0.969 | 0.582 | -0.683 | -0.268 | -0.659 | 18 | 25.6 | 240 | -- | -- |
| 101.08 | 0.468 | 7.14 | -1.25 | 0.971 | 0.573 | -0.823 | -- | -0.643 | 18 | 25.61 | 236 | -- | -- |
| 101.85 | 0.47 | 7.15 | -1.36 | 0.979 | 0.575 | -- | -0.528 | -0.675 | 17.9 | 25.67 | 231 | -- | -- |
| 102.58 | 0.472 | 7.14 | -1.22 | 0.99 | 0.552 | -- | -- | -0.635 | 17.9 | 25.65 | 228 | -- | -- |
| 127.98 | 0.527 | 7.19 | -1.65 | -- | 1.17 | -- | -1.05 | -0.88 | -- | 25.9 | 342 | -- | -- |
| 116.16 | 0.505 | 7.09 | -1.07 | 1.41 | -- | -0.54 | -- | -0.405 | 17.6 | -- | -- | -- | -- |
| 116.87 | 0.506 | 7.1 | -1.07 | 1.41 | -- | -- | -- | -0.407 | 17.6 | -- | -- | -- | -- |
| 130.19 | 0.531 | 7.16 | -1.4 | -- | 1.12 | -- | -- | -0.795 | -- | 25.9 | 322 | -- | -- |
| 140.66 | 0.552 | 7.1 | -- | 1.12 | 0.397 | -- | -- | -0.42 | 17.6 | 25.7 | 227 | -- | -- |
| 219.6 | 0.692 | 7.08 | -1.11 | -- | -- | -- | -- | -0.441 | -- | -- | -- | -- | -- |
| 146.9 | 0.567 | 7.07 | -- | 1.42 | -- | -- | -- | -0.288 | 17.5 | -- | -- | -- | -- |
| 180.81 | 0.626 | 7.11 | -- | -- | 0.979 | -- | -- | -0.597 | -- | 25.9 | 306 | -- | -- |
| 252.29 | 0.741 | 7.05 | -- | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.88 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 16 |
| 10 | 99.04 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 10 |
| 17 | 99.58 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 14 |
| 37 | 100.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 38 | 100.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 46 | 100.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 66 | 101.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 69 | 101.38 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 7 |
| 78 | 101.60 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 10 |
| 90 | 101.73 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 22 |
| 110 | 102.14 | temperature | 25 | 270 | > th | dose independent | sin | 22 | NA |
| 129 | 102.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 177 | 102.86 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 11 |
| 187 | 102.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 237 | 103.34 | temperature | 25 | 270 | < th | dose independent | sin | 22 | NA |
| 250 | 103.41 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 3 |
| 280 | 103.62 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 284 | 103.63 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 19 |
| 292 | 103.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 294 | 103.68 | temperature | 25 | 30 | < th | dose independent | sin | 20 | NA |
| 309 | 103.76 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 17 |
| 316 | 103.79 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 22 |
| 321 | 103.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 358 | 103.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 370 | 104.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 396 | 104.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 435 | 104.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 482 | 104.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 494 | 104.64 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 509 | 104.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 536 | 104.84 | temperature | 15 | 30 | > th | dose dependent | sin | 23 | NA |
| 552 | 104.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 561 | 104.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 576 | 104.95 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 6 |
| 623 | 105.11 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 657 | 105.19 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 9 | 22 |
| 667 | 105.23 | temperature | 25 | 10 | < th | dose independent | rect. | 10 | 14 |
| 678 | 105.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 681 | 105.27 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 16 |
| 682 | 105.28 | radiation | 10 | 30 | > th | dose independent | rect. | 6 | 2 |
| 711 | 105.33 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 1 |
| 740 | 105.41 | wind | 7 | 90 | < th | dose independent | rect. | 8 | 11 |
| 768 | 105.47 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 3 |
| 783 | 105.50 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 822 | 105.58 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 823 | 105.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 833 | 105.61 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 843 | 105.62 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 878 | 105.68 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 896 | 105.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 924 | 105.78 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 18 |
| 935 | 105.80 | atmosphere | 1000 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 945 | 105.82 | atmosphere | 1000 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 964 | 105.86 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 973 | 105.89 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 23 |
| 975 | 105.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 980 | 105.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 992 | 105.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 994 | 105.93 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 20 |
| 999 | 105.94 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 8 | 2 |