Os09g0555400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os09g0555400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.92 | 0.455 | 3.2 | 0.181 | 0.122 | 0.303 | -0.73 | -0.407 | 0.00527 | 6.85 | 3.1 | 251 | -- | -- |
| 94.35 | 0.452 | 3.21 | 0.189 | 0.115 | 0.307 | -0.52 | -- | 0.000616 | 6.72 | 3.099 | 222 | -- | -- |
| 94.89 | 0.454 | 3.21 | 0.163 | 0.101 | 0.282 | -- | -0.118 | 0.00155 | 7.15 | 3 | 209 | -- | -- |
| 94.92 | 0.454 | 3.21 | 0.165 | 0.0949 | 0.274 | -- | -- | -0.0015 | 7.73 | 3 | 209 | -- | -- |
| 95.17 | 0.454 | 3.21 | 0.156 | -- | 0.223 | -- | -0.0911 | 0.00687 | -- | 3.3 | 208 | -- | -- |
| 97.09 | 0.462 | 3.21 | 0.0757 | 0.143 | -- | 0.23 | -- | 0.00577 | 16.9 | -- | -- | -- | -- |
| 97.17 | 0.462 | 3.21 | 0.0769 | 0.146 | -- | -- | -- | 0.00707 | 16.1 | -- | -- | -- | -- |
| 95.19 | 0.454 | 3.21 | 0.15 | -- | 0.228 | -- | -- | 0.00383 | -- | 3.3 | 208 | -- | -- |
| 95.61 | 0.455 | 3.21 | -- | 0.0917 | 0.263 | -- | -- | -0.0173 | 7.89 | 3.2 | 209 | -- | -- |
| 98.33 | 0.463 | 3.21 | 0.071 | -- | -- | -- | -- | 0.00318 | -- | -- | -- | -- | -- |
| 97.33 | 0.461 | 3.21 | -- | 0.145 | -- | -- | -- | -0.00149 | 16.1 | -- | -- | -- | -- |
| 95.73 | 0.456 | 3.21 | -- | -- | 0.207 | -- | -- | -0.0104 | -- | 3.4 | 207 | -- | -- |
| 98.46 | 0.463 | 3.21 | -- | -- | -- | -- | -- | -0.00469 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.26 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 2 |
| 3 | 86.26 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 2 |
| 17 | 86.36 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 23 | 86.36 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 73 | 87.60 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 96 | 89.86 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 4 | 4 |
| 97 | 89.88 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 4 | 4 |
| 120 | 90.72 | radiation | 10.0 | 10 | < th | dose independent | rect. | 8 | 1 |
| 142 | 91.31 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 143 | 91.33 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 4 | 1 |
| 152 | 91.40 | wind | 7.0 | 30 | > th | dose independent | rect. | 17 | 1 |
| 219 | 92.19 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 242 | 92.42 | precipitation | 0.1 | 270 | < th | dose independent | sin | 8 | NA |
| 244 | 92.42 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 8 | NA |
| 260 | 92.48 | wind | 7.0 | 30 | > th | dose dependent | rect. | 16 | 2 |
| 275 | 92.55 | precipitation | 0.1 | 270 | > th | dose independent | sin | 7 | NA |
| 285 | 92.59 | wind | 3.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 286 | 92.60 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 7 | NA |
| 397 | 93.08 | wind | 7.0 | 30 | > th | dose independent | rect. | 16 | 16 |
| 487 | 93.30 | wind | 3.0 | 30 | < th | dose independent | rect. | 10 | 23 |
| 573 | 93.53 | wind | 5.0 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 586 | 93.55 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 595 | 93.57 | wind | 5.0 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 647 | 93.70 | wind | 3.0 | 270 | < th | dose independent | rect. | 8 | 23 |
| 660 | 93.72 | wind | 3.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 669 | 93.74 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 3 |
| 682 | 93.77 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 685 | 93.77 | wind | 5.0 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 688 | 93.78 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 698 | 93.79 | wind | 9.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 699 | 93.80 | wind | 3.0 | 30 | > th | dose independent | rect. | 16 | 20 |
| 700 | 93.80 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 713 | 93.84 | wind | 3.0 | 30 | > th | dose independent | rect. | 14 | 22 |
| 715 | 93.85 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 729 | 93.89 | wind | 3.0 | 30 | > th | dose independent | rect. | 7 | 14 |
| 744 | 93.91 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 1 |
| 748 | 93.92 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 749 | 93.92 | wind | 5.0 | 270 | > th | dose independent | rect. | 14 | 4 |
| 755 | 93.92 | wind | 3.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 781 | 93.96 | wind | 3.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 787 | 93.96 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 789 | 93.97 | wind | 3.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 798 | 93.99 | wind | 3.0 | 30 | > th | dose independent | rect. | 7 | 17 |
| 815 | 94.00 | wind | 5.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 817 | 94.01 | humidity | 80.0 | 270 | < th | dose independent | rect. | 10 | 3 |
| 825 | 94.01 | wind | 5.0 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 826 | 94.01 | wind | 5.0 | 270 | < th | dose dependent | rect. | 21 | 18 |
| 827 | 94.02 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 836 | 94.02 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 841 | 94.03 | humidity | 80.0 | 270 | < th | dose independent | rect. | 11 | 1 |
| 845 | 94.03 | wind | 3.0 | 270 | < th | dose independent | rect. | 21 | 18 |
| 852 | 94.04 | wind | 3.0 | 270 | > th | dose independent | no | NA | NA |
| 855 | 94.04 | wind | 3.0 | 270 | > th | dose independent | rect. | 20 | 23 |
| 857 | 94.04 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 861 | 94.04 | wind | 1.0 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 876 | 94.05 | wind | 3.0 | 270 | < th | dose independent | rect. | 14 | 23 |
| 886 | 94.06 | wind | 3.0 | 270 | < th | dose independent | rect. | 21 | 16 |
| 894 | 94.06 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 914 | 94.08 | wind | 3.0 | 270 | < th | dose independent | no | NA | NA |
| 941 | 94.09 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 961 | 94.10 | wind | 5.0 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 969 | 94.11 | wind | 5.0 | 270 | < th | dose dependent | rect. | 18 | 21 |