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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0554200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.25 (0.0517) R2 : 0.795
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.94 (0.139) R2dC : 0.385 R2C : 0.534
β3 : 2.62 (0.113) R2dE : 0.263 R2E : 0.406
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.172 (0.109) R2dN8 : 0.0014 R2N8 : -0.00241
σ : 0.97
deviance : 433.53
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C
peak time of C : 17.3
E
wheather : temperature
threshold : 20.13
memory length : 344
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 14.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
428.8 0.973 5.26 -0.536 3.71 2.53 0.277 -0.086 -0.236 17.5 20.1 286 12.1 14.8
427.94 0.963 5.26 -0.5 3.71 2.6 0.0289 -- -0.242 17.4 20.08 296 12.2 14.6
428.04 0.964 5.26 -0.515 3.73 2.56 -- 0.0803 -0.224 17.4 20 293 12.3 14.5
426.91 0.962 5.26 -0.545 3.82 2.79 -- -- -0.256 17.2 20.2 338 12.3 14.4
631.82 1.17 5.13 -0.412 -- 3.89 -- 1.25 -0.0895 -- 19.37 209 11.6 13.5
578.2 1.13 5.25 0.0409 5.38 -- 1.27 -- 0.0854 19.1 -- -- -- --
582.42 1.13 5.25 0.0164 5.38 -- -- -- 0.0888 19.1 -- -- -- --
611.64 1.15 5.12 -0.311 -- 4.13 -- -- -0.19 -- 19.4 212 11.6 13.1
433.53 0.97 5.25 -- 3.94 2.62 -- -- -0.172 17.3 20.13 344 12.1 14.6
2111.79 2.15 5.13 -0.0864 -- -- -- -- -0.00707 -- -- -- -- --
582.43 1.13 5.25 -- 5.38 -- -- -- 0.087 19.1 -- -- -- --
551.08 1.09 5.15 -- -- 4.57 -- -- -0.193 -- 19.53 277 11.1 11.6
2111.98 2.15 5.13 -- -- -- -- -- 0.00252 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 431.31 temperature 20.0 270 > th dose independent rect. 12 15
18 453.99 temperature 20.0 270 < th dose independent rect. 16 9
22 455.52 temperature 20.0 10 > th dose independent rect. 15 17
38 457.88 temperature 30.0 90 < th dose dependent rect. 18 7
41 458.19 temperature 20.0 10 > th dose independent rect. 14 15
49 459.99 temperature 25.0 270 < th dose dependent rect. 16 9
68 461.25 temperature 20.0 10 < th dose independent rect. 17 10
122 464.30 temperature 30.0 10 < th dose dependent rect. 18 8
144 465.63 temperature 20.0 10 < th dose independent sin 13 NA
221 469.45 temperature 20.0 270 > th dose independent sin 16 NA
223 469.61 temperature 25.0 270 < th dose dependent rect. 21 1
235 470.61 temperature 20.0 270 < th dose independent sin 15 NA
276 472.27 temperature 15.0 270 > th dose dependent rect. 6 6
304 473.93 temperature 20.0 30 > th dose independent sin 13 NA
401 477.99 temperature 25.0 270 < th dose dependent sin 15 NA
419 478.42 temperature 25.0 90 < th dose dependent sin 13 NA
466 479.49 temperature 20.0 10 > th dose dependent rect. 8 7
481 479.88 temperature 10.0 270 > th dose dependent rect. 22 9
496 480.35 temperature 20.0 270 > th dose independent rect. 22 9
505 480.60 temperature 25.0 10 < th dose dependent sin 13 NA
523 481.03 humidity 80.0 10 > th dose independent rect. 1 16
577 482.62 humidity 70.0 90 > th dose dependent rect. 24 16
595 483.04 humidity 90.0 30 < th dose independent rect. 20 19
682 485.21 wind 7.0 270 < th dose independent rect. 19 16
796 487.56 atmosphere 995.0 90 > th dose dependent rect. 19 6
807 487.76 temperature 15.0 270 > th dose dependent rect. 13 16
877 488.83 temperature 30.0 270 < th dose independent rect. 16 8
905 489.27 temperature 25.0 10 > th dose dependent rect. 20 19
915 489.46 atmosphere 995.0 270 > th dose dependent rect. 17 7
938 489.82 precipitation 0.1 270 < th dose independent rect. 18 17
939 489.82 precipitation 0.1 270 < th dose dependent rect. 18 17
978 490.56 humidity 60.0 270 > th dose independent rect. 16 8
988 490.74 humidity 70.0 90 > th dose independent rect. 18 7