Os09g0553300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NUDIX hydrolase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0553300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NUDIX hydrolase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.47 | 0.232 | 10.7 | -0.394 | 0.208 | -0.589 | 0.386 | 0.141 | -0.0507 | 6.32 | 20.37 | 35 | -- | -- |
| 24.46 | 0.23 | 10.7 | -0.423 | 0.196 | -0.586 | 0.339 | -- | -0.0614 | 6.38 | 20.95 | 43 | -- | -- |
| 24.75 | 0.232 | 10.7 | -0.406 | 0.2 | -0.597 | -- | 0.044 | -0.0592 | 6.64 | 21.44 | 34 | -- | -- |
| 24.76 | 0.232 | 10.7 | -0.413 | 0.198 | -0.599 | -- | -- | -0.0586 | 6.66 | 21.55 | 34 | -- | -- |
| 25.76 | 0.236 | 10.7 | -0.361 | -- | -0.72 | -- | 0.568 | -0.07 | -- | 24.07 | 106 | -- | -- |
| 29.7 | 0.256 | 10.8 | -0.534 | 0.371 | -- | 0.509 | -- | -0.155 | 4.64 | -- | -- | -- | -- |
| 30.39 | 0.258 | 10.8 | -0.537 | 0.374 | -- | -- | -- | -0.157 | 4.58 | -- | -- | -- | -- |
| 25.66 | 0.236 | 10.7 | -0.415 | -- | -0.677 | -- | -- | -0.0745 | -- | 24.1 | 102 | -- | -- |
| 28.82 | 0.25 | 10.7 | -- | 0.162 | -0.733 | -- | -- | 0.0102 | 7.59 | 20.37 | 63 | -- | -- |
| 37.85 | 0.287 | 10.8 | -0.523 | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
| 37.99 | 0.288 | 10.7 | -- | 0.364 | -- | -- | -- | -0.0976 | 4.62 | -- | -- | -- | -- |
| 30.02 | 0.255 | 10.7 | -- | -- | -0.751 | -- | -- | 0.00828 | -- | 22.09 | 90 | -- | -- |
| 45.05 | 0.313 | 10.7 | -- | -- | -- | -- | -- | -0.0896 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.22 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 22 |
| 24 | 21.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 73 | 22.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 148 | 23.40 | temperature | 25 | 30 | < th | dose independent | rect. | 4 | 17 |
| 164 | 23.55 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 181 | 23.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 194 | 23.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 16 |
| 204 | 23.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 250 | 23.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 274 | 24.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 325 | 24.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 337 | 24.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 368 | 24.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 376 | 24.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 389 | 24.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 405 | 24.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 406 | 24.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 415 | 24.51 | temperature | 30 | 10 | < th | dose dependent | sin | 20 | NA |
| 422 | 24.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 22 |
| 423 | 24.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 431 | 24.54 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 445 | 24.57 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 15 |
| 447 | 24.58 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 16 |
| 449 | 24.58 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 20 |
| 460 | 24.61 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 478 | 24.64 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 480 | 24.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 14 |
| 488 | 24.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 498 | 24.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 516 | 24.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 557 | 24.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 565 | 24.77 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 573 | 24.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 588 | 24.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 592 | 24.82 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 23 |
| 593 | 24.82 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 23 |
| 634 | 24.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 708 | 24.96 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 22 |
| 713 | 24.97 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 716 | 24.97 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 757 | 25.02 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 758 | 25.02 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 763 | 25.03 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 10 |
| 809 | 25.07 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 22 |
| 840 | 25.09 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 875 | 25.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 981 | 25.18 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 15 |