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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0552900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAM (No apical meristem)-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0531) R2 : 0.13
β1 : 0.701 (0.197) R2dD : 0.0269 R2D : 0.00688
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.52 (0.861) R2dE : 0.412 R2E : -0.122
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10 (1.92) R2dD*E : 0.196 R2D*E : -0.257
γ1 : 0.0685 (0.112) R2dN8 : 0.000972 R2N8 : -0.00548
σ : 0.972
deviance : 435.86
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.56
memory length : 2
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.39
open length of G : 10.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
433.51 0.978 3.1 0.709 0.198 6.64 -0.219 9.96 0.0761 21.3 23.6 2 6.08 9.92
455.88 1 3.04 0.746 0.188 2.85 -0.773 -- 0.0978 21.6 24.37 3 7.93 10
433.66 0.97 3.1 0.713 0.198 6.66 -- 10.1 0.0751 21.5 23.6 2 6.67 10.1
456.58 0.995 3.04 0.718 0.18 2.64 -- -- 0.11 22 24.84 3 7.91 10.1
435.86 0.972 3.1 0.701 -- 6.52 -- 10 0.0685 -- 23.56 2 7.39 10.5
494.08 1.04 3.07 0.453 0.0897 -- -0.529 -- -0.0323 16.7 -- -- -- --
494.78 1.04 3.07 0.451 0.0882 -- -- -- -0.0349 15.7 -- -- -- --
458.63 0.997 3.04 0.743 -- 2.52 -- -- 0.11 -- 24.8 3 7.95 10
471.3 1.01 3.05 -- 0.158 2.26 -- -- 0.0662 21.8 24.8 3 7.77 10.2
495.21 1.04 3.07 0.447 -- -- -- -- -0.0373 -- -- -- -- --
500.14 1.05 3.08 -- 0.0793 -- -- -- -0.0851 15.7 -- -- -- --
472.81 1.01 3.03 -- -- 2.19 -- -- 0.0461 -- 24.87 3 7.92 10.1
500.48 1.04 3.08 -- -- -- -- -- -0.0869 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 444.03 temperature 25.0 10 < th dose dependent rect. 7 10
10 450.38 temperature 20.0 10 < th dose dependent rect. 7 6
12 450.43 temperature 20.0 90 < th dose dependent rect. 6 15
23 451.72 temperature 10.0 270 > th dose dependent rect. 14 22
54 452.94 temperature 25.0 10 < th dose dependent sin 22 NA
56 453.09 temperature 15.0 270 > th dose dependent rect. 2 21
61 453.26 temperature 15.0 270 > th dose dependent rect. 3 19
62 453.33 wind 1.0 43200 < th dose dependent rect. 20 1
63 453.42 wind 7.0 90 > th dose independent rect. 3 6
66 453.48 wind 7.0 90 > th dose dependent rect. 3 6
71 453.55 wind 7.0 90 > th dose independent rect. 7 2
74 453.58 wind 7.0 90 > th dose dependent rect. 7 2
83 453.85 temperature 15.0 10 > th dose dependent rect. 3 23
86 453.91 temperature 30.0 10 < th dose dependent rect. 13 22
91 454.15 temperature 30.0 90 < th dose dependent rect. 12 22
113 455.27 temperature 15.0 10 > th dose dependent rect. 14 23
116 455.41 temperature 25.0 90 < th dose dependent rect. 6 17
124 455.83 temperature 30.0 270 < th dose dependent rect. 12 1
127 455.91 temperature 10.0 720 > th dose dependent rect. 24 20
128 455.92 temperature 25.0 10 < th dose dependent rect. 7 15
129 455.93 wind 7.0 43200 > th dose independent rect. 20 1
133 456.00 wind 7.0 43200 < th dose independent rect. 20 1
145 456.34 wind 5.0 43200 > th dose dependent rect. 19 2
148 456.54 temperature 10.0 720 > th dose dependent rect. 24 16
151 456.60 humidity 90.0 1440 < th dose independent rect. 4 2
152 456.60 radiation 1.0 90 < th dose independent rect. 10 3
154 456.60 radiation 1.0 90 < th dose dependent rect. 10 3
155 456.62 temperature 30.0 270 < th dose dependent rect. 12 3
156 456.71 temperature 20.0 10 < th dose independent rect. 7 6
166 456.95 wind 9.0 43200 > th dose dependent rect. 17 4
175 457.15 temperature 30.0 90 < th dose dependent rect. 12 5
178 457.24 radiation 1.0 43200 < th dose dependent rect. 1 3
187 457.33 temperature 25.0 90 < th dose independent rect. 13 4
198 457.57 radiation 1.0 43200 < th dose dependent rect. 20 8
200 457.58 atmosphere 1015.0 1440 < th dose independent rect. 18 2
210 457.66 radiation 1.0 43200 < th dose dependent rect. 22 6
221 457.86 wind 9.0 43200 < th dose independent rect. 18 4
227 457.94 wind 9.0 43200 > th dose dependent rect. 17 6
233 458.00 temperature 30.0 720 < th dose dependent rect. 2 22
242 458.09 temperature 30.0 720 < th dose dependent rect. 4 20
244 458.12 temperature 30.0 720 < th dose dependent rect. 2 15
253 458.23 temperature 30.0 720 < th dose dependent rect. 4 13
267 458.40 temperature 30.0 720 < th dose dependent rect. 21 20
294 458.66 temperature 30.0 10 < th dose dependent rect. 7 23
301 458.73 temperature 30.0 10 < th dose dependent rect. 21 20
308 458.81 radiation 1.0 43200 < th dose dependent rect. 23 1
314 458.91 temperature 10.0 720 > th dose dependent sin 2 NA
324 458.97 temperature 30.0 10 < th dose dependent rect. 13 4
325 458.97 wind 9.0 43200 > th dose dependent rect. 17 12
363 459.25 temperature 20.0 1440 > th dose independent rect. 10 21
368 459.27 radiation 1.0 270 < th dose dependent rect. 6 8
389 459.37 temperature 10.0 720 > th dose dependent rect. 17 23
405 459.46 atmosphere 1015.0 1440 < th dose independent rect. 15 5
451 459.66 temperature 20.0 270 < th dose independent rect. 6 1
454 459.67 atmosphere 1005.0 270 > th dose dependent rect. 12 4
464 459.70 temperature 10.0 720 > th dose dependent rect. 8 23
470 459.75 temperature 20.0 1440 < th dose independent rect. 5 1
474 459.78 temperature 20.0 1440 > th dose independent rect. 14 17
478 459.78 temperature 30.0 90 < th dose dependent rect. 6 23
487 459.84 atmosphere 995.0 43200 < th dose independent rect. 14 1
489 459.84 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
520 460.03 temperature 10.0 720 > th dose dependent no NA NA
521 460.03 atmosphere 995.0 43200 < th dose dependent rect. 15 1
524 460.04 temperature 30.0 720 < th dose dependent sin 1 NA
537 460.08 temperature 20.0 1440 > th dose independent rect. 4 3
546 460.11 temperature 30.0 270 < th dose dependent rect. 9 23
551 460.13 temperature 20.0 1440 > th dose independent rect. 18 13
553 460.14 temperature 20.0 1440 < th dose independent rect. 4 3
579 460.22 temperature 30.0 90 < th dose dependent rect. 19 22
607 460.34 temperature 25.0 30 < th dose independent rect. 13 22
611 460.35 temperature 10.0 720 > th dose dependent rect. 6 23
616 460.37 temperature 25.0 10 < th dose independent rect. 14 2
619 460.38 temperature 20.0 1440 > th dose independent rect. 2 5
622 460.39 temperature 30.0 4320 < th dose dependent rect. 3 1
634 460.45 precipitation 0.1 43200 > th dose dependent rect. 17 1
641 460.48 temperature 20.0 1440 < th dose independent rect. 9 22
656 460.52 temperature 20.0 1440 > th dose independent rect. 21 10
660 460.53 temperature 10.0 4320 > th dose dependent rect. 3 1
682 460.59 temperature 20.0 1440 > th dose independent rect. 21 22
694 460.62 temperature 20.0 270 < th dose independent rect. 5 15
701 460.65 humidity 90.0 1440 > th dose independent rect. 4 2
730 460.75 temperature 10.0 720 > th dose dependent rect. 4 8
746 460.81 precipitation 0.1 43200 > th dose dependent rect. 20 1
762 460.87 temperature 20.0 90 < th dose independent rect. 7 11
765 460.89 temperature 20.0 1440 > th dose independent rect. 1 23
772 460.91 temperature 10.0 720 > th dose dependent rect. 19 17
783 460.93 temperature 20.0 1440 > th dose independent rect. 18 18
786 460.93 temperature 10.0 720 > th dose dependent rect. 24 12
806 461.00 temperature 20.0 1440 > th dose independent rect. 14 22
807 461.00 temperature 20.0 1440 > th dose independent rect. 18 23
812 461.02 temperature 10.0 10 > th dose dependent no NA NA
823 461.06 temperature 20.0 1440 > th dose independent rect. 21 15
825 461.06 temperature 10.0 4320 > th dose dependent rect. 1 1
826 461.06 temperature 30.0 4320 < th dose dependent rect. 1 1
830 461.07 temperature 20.0 1440 < th dose independent rect. 14 17
840 461.09 temperature 20.0 10 < th dose independent rect. 7 11
845 461.10 temperature 30.0 4320 < th dose dependent rect. 24 4
846 461.10 temperature 15.0 10 > th dose dependent rect. 17 23
857 461.12 temperature 10.0 720 > th dose dependent rect. 17 19
863 461.14 atmosphere 1000.0 43200 < th dose independent rect. 3 1
866 461.14 temperature 10.0 4320 > th dose dependent rect. 1 3
878 461.16 temperature 20.0 1440 > th dose independent rect. 1 18
879 461.16 wind 9.0 43200 > th dose dependent rect. 20 8
897 461.20 atmosphere 995.0 43200 > th dose independent rect. 14 1
930 461.26 temperature 30.0 4320 < th dose dependent rect. 20 9
937 461.27 temperature 25.0 4320 < th dose dependent rect. 21 1
938 461.27 temperature 10.0 4320 > th dose dependent rect. 20 9
940 461.28 temperature 20.0 1440 > th dose independent no NA NA
948 461.29 temperature 20.0 1440 > th dose independent sin 9 NA
962 461.31 atmosphere 1000.0 43200 > th dose independent rect. 3 1