Os09g0552600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupin 1 domain containing protein.
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Os09g0552600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupin 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 476.52 | 1.03 | 5.31 | -5.48 | 1 | 3.26 | -1.19 | -6.33 | -0.865 | 6.65 | 21.75 | 1139 | 10.8 | -- |
| 502.55 | 1.04 | 5.14 | -4.01 | 0.859 | 3.18 | -1.58 | -- | -0.48 | 6.87 | 18.46 | 1135 | 11.3 | -- |
| 479.98 | 1.02 | 5.31 | -5.51 | 0.995 | 3.23 | -- | -6.35 | -0.863 | 6.46 | 21.74 | 1149 | 10.8 | -- |
| 506.08 | 1.05 | 5.14 | -3.98 | 0.968 | 3.24 | -- | -- | -0.478 | 7.26 | 18.42 | 1140 | 11.8 | -- |
| 506.6 | 1.05 | 5.34 | -5.44 | -- | 3.77 | -- | -5.98 | -0.962 | -- | 20.94 | 1025 | 8.33 | -- |
| 707.22 | 1.25 | 5.01 | -3.1 | 1.69 | -- | -0.914 | -- | 0.0566 | 4.9 | -- | -- | -- | -- |
| 709.35 | 1.25 | 5.01 | -3.1 | 1.68 | -- | -- | -- | 0.061 | 4.86 | -- | -- | -- | -- |
| 514 | 1.06 | 5.16 | -4.09 | -- | 4.09 | -- | -- | -0.501 | -- | 9.158 | 1175 | 10.4 | -- |
| 863.82 | 1.37 | 4.92 | -- | 1.29 | 1.71 | -- | -- | 0.379 | 5.85 | 24.98 | 1099 | 9.46 | -- |
| 858.42 | 1.37 | 5.03 | -3.03 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 962 | 1.45 | 4.93 | -- | 1.62 | -- | -- | -- | 0.406 | 4.92 | -- | -- | -- | -- |
| 901.89 | 1.4 | 5.03 | -- | -- | 2.86 | -- | -- | 0.173 | -- | -7.899 | 1193 | 10.8 | -- |
| 1101.2 | 1.55 | 4.95 | -- | -- | -- | -- | -- | 0.441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 487.97 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 16 |
| 2 | 488.16 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 5 | 488.39 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 18 |
| 7 | 488.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 8 | 488.83 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 13 | 489.46 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 20 | 489.75 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 31 | 490.17 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 40 | 490.42 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 57 | 490.78 | wind | 3 | 43200 | > th | dose dependent | sin | 1 | NA |
| 78 | 491.34 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 114 | 491.98 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 120 | 492.10 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 151 | 492.58 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 192 | 493.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 204 | 493.27 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 218 | 493.42 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 222 | 493.44 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 233 | 493.49 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 236 | 493.56 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 269 | 493.90 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 272 | 493.93 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 286 | 494.09 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 333 | 494.59 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 374 | 495.03 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 385 | 495.18 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 502 | 496.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 617 | 497.43 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 730 | 498.66 | wind | 9 | 43200 | < th | dose dependent | sin | 2 | NA |
| 763 | 499.03 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 805 | 499.34 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 845 | 499.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 914 | 500.52 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 935 | 500.68 | wind | 5 | 43200 | > th | dose independent | sin | 15 | NA |
| 958 | 500.94 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |