Os09g0552300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0552300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.02 | 0.352 | 11.8 | 0.399 | 2.25 | -1.3 | 1.05 | 0.614 | 0.0726 | 6.12 | 17.71 | 48 | -- | -- |
| 56.34 | 0.35 | 11.8 | 0.304 | 2.24 | -1.26 | 0.957 | -- | 0.0428 | 6.12 | 17.9 | 56 | -- | -- |
| 58.49 | 0.356 | 11.8 | 0.358 | 2.25 | -1.27 | -- | 0.316 | 0.0555 | 6.08 | 17.91 | 57 | -- | -- |
| 58.56 | 0.356 | 11.8 | 0.313 | 2.24 | -1.28 | -- | -- | 0.0413 | 6.09 | 17.9 | 57 | -- | -- |
| 208.04 | 0.672 | 11.8 | 0.756 | -- | -2.72 | -- | 0.948 | 0.218 | -- | 24.3 | 345 | -- | -- |
| 77.7 | 0.413 | 11.8 | 0.0213 | 2.55 | -- | 1.1 | -- | -0.162 | 5.62 | -- | -- | -- | -- |
| 80.62 | 0.42 | 11.8 | 0.026 | 2.55 | -- | -- | -- | -0.167 | 5.59 | -- | -- | -- | -- |
| 209.63 | 0.674 | 11.8 | 0.556 | -- | -2.69 | -- | -- | 0.158 | -- | 24.3 | 345 | -- | -- |
| 60.91 | 0.363 | 11.8 | -- | 2.28 | -1.15 | -- | -- | -0.00865 | 6.03 | 18 | 56 | -- | -- |
| 418.92 | 0.956 | 11.9 | 0.109 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 80.64 | 0.42 | 11.8 | -- | 2.55 | -- | -- | -- | -0.17 | 5.59 | -- | -- | -- | -- |
| 217.56 | 0.687 | 11.8 | -- | -- | -2.61 | -- | -- | 0.0872 | -- | 24.3 | 338 | -- | -- |
| 419.23 | 0.956 | 11.9 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 14 | 49.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 20 |
| 58 | 53.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 63 | 53.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 76 | 53.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 90 | 54.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 13 |
| 99 | 54.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 141 | 54.94 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 22 |
| 200 | 55.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 223 | 56.36 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 13 |
| 235 | 56.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 243 | 56.75 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 22 |
| 251 | 56.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 257 | 56.91 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 3 |
| 282 | 57.25 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 20 |
| 292 | 57.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 295 | 57.33 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 308 | 57.49 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 12 |
| 313 | 57.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 326 | 57.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 334 | 57.65 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 359 | 57.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 360 | 57.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 378 | 58.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 404 | 58.36 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 421 | 58.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 11 |
| 422 | 58.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 429 | 58.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 471 | 58.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 507 | 59.02 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 18 |
| 510 | 59.05 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 21 |
| 528 | 59.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 530 | 59.11 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 534 | 59.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 596 | 59.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 610 | 59.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 13 |
| 612 | 59.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 615 | 59.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 628 | 59.47 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 13 |
| 644 | 59.50 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 662 | 59.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 673 | 59.55 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 18 |
| 698 | 59.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 708 | 59.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 715 | 59.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 761 | 59.70 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 783 | 59.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 794 | 59.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 813 | 59.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 15 |
| 854 | 59.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 930 | 59.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 955 | 59.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 15 |