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Os09g0551900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA mismatch repair protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.98 (0.0169) R2 : 0.015
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0938 (0.0356) R2dN8 : 0.0194 R2N8 : 0.015
σ : 0.318
deviance : 46.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.08 0.266 9.97 -0.172 0.427 -0.231 -0.574 0.393 -0.0564 18.3 20 331 -- --
32.35 0.265 9.99 -0.207 0.438 -0.328 -0.46 -- -0.0695 18.5 19.6 417 -- --
32.82 0.267 9.98 -0.174 0.434 -0.264 -- 0.261 -0.069 18.2 20.1 336 -- --
32.91 0.267 9.98 -0.206 0.437 -0.309 -- -- -0.0645 18.4 19.9 417 -- --
40.55 0.297 9.96 -0.125 -- -0.335 -- 0.363 -0.0449 -- 18.6 2965 -- --
34.8 0.277 9.99 -0.321 0.401 -- -0.494 -- -0.12 18.5 -- -- -- --
35.4 0.279 10 -0.314 0.4 -- -- -- -0.121 18.4 -- -- -- --
40.55 0.297 9.97 -0.107 -- -0.443 -- -- -0.0383 -- 19.2 2841 -- --
32.82 0.267 9.96 -- 0.39 -0.472 -- -- -0.0136 18.4 19.27 3214 -- --
43.7 0.309 9.99 -0.324 -- -- -- -- -0.13 -- -- -- -- --
38 0.288 9.99 -- 0.404 -- -- -- -0.0863 18.3 -- -- -- --
40.75 0.297 9.96 -- -- -0.506 -- -- -0.0159 -- 19.13 2853 -- --
46.47 0.318 9.98 -- -- -- -- -- -0.0938 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.35 temperature 20.0 270 > th dose independent rect. 2 6
2 28.52 temperature 20.0 270 > th dose independent rect. 3 4
12 29.31 temperature 15.0 270 > th dose dependent rect. 3 4
20 29.73 temperature 20.0 10 > th dose dependent rect. 3 6
26 29.81 temperature 20.0 10 > th dose dependent rect. 5 4
42 29.94 temperature 20.0 270 > th dose independent rect. 13 19
62 30.09 wind 1.0 30 > th dose independent rect. 9 21
79 30.20 temperature 20.0 10 > th dose dependent rect. 24 9
89 30.28 temperature 20.0 270 > th dose independent rect. 2 18
100 30.34 wind 9.0 14400 < th dose independent rect. 7 3
112 30.38 temperature 15.0 4320 > th dose independent rect. 7 3
126 30.43 temperature 15.0 10 > th dose dependent rect. 15 18
142 30.53 wind 7.0 270 < th dose independent rect. 7 20
147 30.55 temperature 10.0 270 > th dose dependent rect. 15 16
176 30.66 radiation 10.0 270 < th dose independent rect. 3 4
177 30.66 humidity 80.0 270 > th dose independent rect. 2 5
181 30.67 temperature 20.0 10 > th dose dependent rect. 19 14
213 30.78 humidity 60.0 270 > th dose independent rect. 7 20
233 30.83 wind 7.0 270 < th dose independent rect. 7 8
243 30.86 radiation 1.0 90 < th dose dependent sin 11 NA
247 30.87 radiation 1.0 90 > th dose independent rect. 18 14
248 30.87 wind 7.0 90 < th dose independent rect. 9 18
254 30.89 humidity 50.0 14400 > th dose independent rect. 7 2
257 30.89 wind 9.0 270 < th dose dependent rect. 7 8
260 30.90 atmosphere 1010.0 270 < th dose independent rect. 3 4
262 30.90 wind 1.0 90 > th dose independent rect. 7 23
273 30.94 wind 5.0 270 < th dose independent rect. 7 6
283 30.96 humidity 50.0 270 > th dose dependent rect. 2 5
292 30.98 radiation 1.0 90 < th dose independent sin 11 NA
300 30.99 radiation 1.0 90 > th dose independent rect. 5 3
311 31.00 precipitation 0.1 270 < th dose independent rect. 2 5
312 31.00 humidity 50.0 14400 > th dose independent rect. 3 6
326 31.00 radiation 20.0 270 < th dose dependent rect. 3 4
329 31.00 precipitation 0.1 270 < th dose dependent rect. 2 5
331 31.01 humidity 90.0 10 < th dose independent rect. 6 3
343 31.03 radiation 1.0 90 > th dose independent sin 11 NA
345 31.03 wind 9.0 270 < th dose independent rect. 2 5
346 31.03 temperature 10.0 270 > th dose independent rect. 2 5
348 31.03 temperature 30.0 270 < th dose independent rect. 2 5
349 31.03 humidity 50.0 270 > th dose independent rect. 2 5
351 31.03 atmosphere 995.0 270 > th dose independent rect. 2 5
357 31.03 temperature 10.0 270 > th dose independent rect. 7 19
361 31.05 humidity 70.0 270 > th dose independent rect. 18 9
365 31.05 humidity 50.0 10 > th dose independent rect. 9 21
368 31.05 temperature 15.0 720 > th dose dependent rect. 19 12
373 31.06 wind 3.0 10 < th dose independent rect. 6 3
389 31.07 precipitation 0.1 270 < th dose independent rect. 7 19
391 31.07 precipitation 0.1 270 < th dose dependent rect. 7 19
399 31.08 temperature 10.0 720 > th dose dependent rect. 19 6
416 31.09 wind 9.0 90 < th dose dependent rect. 9 6
469 31.16 wind 5.0 270 < th dose independent rect. 9 1
480 31.16 wind 9.0 270 < th dose dependent rect. 7 19
500 31.19 wind 9.0 270 < th dose dependent rect. 3 4
526 31.22 radiation 30.0 270 < th dose dependent rect. 2 7
529 31.23 wind 5.0 270 < th dose independent rect. 8 3
530 31.23 temperature 30.0 270 < th dose independent rect. 18 9
574 31.25 atmosphere 995.0 270 > th dose independent rect. 15 16
580 31.25 wind 7.0 10 < th dose dependent rect. 6 3
623 31.28 radiation 30.0 90 < th dose independent rect. 5 4
634 31.29 wind 9.0 10 < th dose independent rect. 4 5
636 31.29 temperature 10.0 10 > th dose independent rect. 4 5
641 31.29 temperature 30.0 10 < th dose independent rect. 4 5
643 31.29 humidity 50.0 10 > th dose independent rect. 4 5
647 31.29 atmosphere 995.0 10 > th dose independent rect. 4 5
649 31.29 atmosphere 1015.0 10 < th dose independent rect. 4 5
653 31.29 temperature 10.0 10 > th dose independent rect. 9 19
661 31.30 wind 3.0 43200 < th dose independent rect. 3 1
663 31.30 precipitation 0.1 10 < th dose independent rect. 4 5
672 31.30 precipitation 0.1 10 < th dose dependent rect. 4 5
679 31.31 wind 3.0 43200 > th dose independent rect. 3 1
682 31.31 wind 3.0 43200 > th dose independent rect. 3 4
688 31.31 radiation 40.0 90 < th dose independent rect. 15 18
695 31.31 radiation 10.0 4320 > th dose dependent rect. 17 1
728 31.32 radiation 1.0 10 < th dose dependent sin 10 NA
743 31.33 wind 3.0 43200 < th dose independent rect. 3 4
764 31.34 radiation 1.0 270 < th dose dependent rect. 18 9
768 31.35 radiation 40.0 10 < th dose independent rect. 6 3
771 31.35 atmosphere 995.0 10 > th dose independent rect. 9 8
786 31.36 precipitation 0.1 10 < th dose independent rect. 15 18
794 31.36 precipitation 0.1 10 < th dose dependent rect. 15 18
796 31.37 radiation 1.0 90 > th dose independent rect. 6 1
800 31.37 wind 7.0 10 < th dose independent rect. 6 3
803 31.37 temperature 10.0 10 > th dose independent rect. 6 3
805 31.37 temperature 30.0 10 < th dose independent rect. 6 3
806 31.37 humidity 50.0 10 > th dose independent rect. 6 3
808 31.37 atmosphere 995.0 10 > th dose independent rect. 6 3
809 31.37 atmosphere 1015.0 10 < th dose independent rect. 6 3
810 31.37 precipitation 0.1 10 < th dose independent rect. 6 3
818 31.37 precipitation 0.1 270 < th dose independent rect. 7 8
819 31.37 precipitation 0.1 10 < th dose independent rect. 17 16
821 31.37 temperature 10.0 10 > th dose independent rect. 9 21
823 31.37 precipitation 0.1 10 < th dose dependent rect. 6 3
828 31.37 precipitation 0.1 270 < th dose dependent rect. 7 8
831 31.37 precipitation 0.1 10 < th dose dependent rect. 17 16
845 31.38 atmosphere 995.0 10 > th dose independent rect. 17 16
854 31.38 radiation 1.0 270 < th dose dependent rect. 15 12
861 31.39 temperature 10.0 270 > th dose independent rect. 7 8
862 31.39 atmosphere 995.0 270 > th dose independent rect. 7 8
863 31.39 atmosphere 1015.0 270 < th dose independent rect. 7 8
865 31.39 temperature 10.0 270 > th dose independent rect. 15 16
869 31.39 radiation 40.0 90 < th dose independent rect. 13 20
882 31.40 radiation 1.0 270 < th dose independent rect. 18 9
883 31.40 humidity 70.0 270 > th dose independent rect. 15 12
899 31.41 radiation 1.0 4320 > th dose independent rect. 18 16
904 31.41 wind 7.0 270 < th dose dependent rect. 9 2
909 31.41 radiation 30.0 14400 > th dose dependent rect. 16 16
912 31.42 temperature 20.0 270 < th dose independent rect. 22 11
915 31.42 radiation 40.0 270 < th dose independent rect. 15 16
924 31.42 radiation 10.0 4320 < th dose dependent rect. 18 11
928 31.42 wind 9.0 90 < th dose dependent rect. 9 18
930 31.43 wind 1.0 10 > th dose independent rect. 6 3
946 31.43 wind 3.0 43200 > th dose independent rect. 2 11
948 31.43 temperature 20.0 30 > th dose independent rect. 19 14
965 31.43 radiation 1.0 270 < th dose dependent rect. 5 22
976 31.44 humidity 50.0 10 > th dose independent rect. 9 8
978 31.44 wind 3.0 43200 < th dose independent rect. 2 11
979 31.44 precipitation 0.1 270 < th dose independent rect. 15 16
989 31.44 precipitation 0.1 270 < th dose dependent rect. 15 16