Os09g0551100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0551100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.59 | 0.409 | 3.08 | -0.303 | 0.131 | 0.56 | 0.0385 | -4.78 | 0.0173 | 11.7 | 31.06 | 2 | -- | -- |
| 76.88 | 0.408 | 3.06 | -0.0275 | 0.142 | 0.738 | 0.0593 | -- | 0.00121 | 10.9 | 34.9 | 2 | -- | -- |
| 75.56 | 0.405 | 3.08 | -0.3 | 0.13 | 0.568 | -- | -4.86 | 0.0165 | 11.6 | 31.1 | 4 | -- | -- |
| 76.67 | 0.411 | 3.05 | -0.03 | 0.137 | 1.1 | -- | -- | 0.0119 | 11.6 | 34.76 | 3 | -- | -- |
| 76.6 | 0.408 | 3.08 | -0.311 | -- | 0.61 | -- | -4.95 | 0.0183 | -- | 31.1 | 4 | -- | -- |
| 77.88 | 0.414 | 3.05 | -0.0246 | 0.144 | -- | 0.0199 | -- | 0.00964 | 11.8 | -- | -- | -- | -- |
| 77.88 | 0.413 | 3.05 | -0.0238 | 0.144 | -- | -- | -- | 0.00969 | 11.8 | -- | -- | -- | -- |
| 77.86 | 0.413 | 3.06 | -0.0341 | -- | 1.16 | -- | -- | 0.0105 | -- | 34.76 | 4 | -- | -- |
| 76.7 | 0.41 | 3.05 | -- | 0.138 | 1.1 | -- | -- | 0.0152 | 11.6 | 34.74 | 3 | -- | -- |
| 79.19 | 0.416 | 3.06 | -0.0281 | -- | -- | -- | -- | 0.00789 | -- | -- | -- | -- | -- |
| 77.9 | 0.413 | 3.05 | -- | 0.145 | -- | -- | -- | 0.0123 | 11.8 | -- | -- | -- | -- |
| 77.89 | 0.412 | 3.05 | -- | -- | 1.15 | -- | -- | 0.0142 | -- | 34.76 | 4 | -- | -- |
| 79.21 | 0.415 | 3.06 | -- | -- | -- | -- | -- | 0.011 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.90 | humidity | 80 | 30 | < th | dose independent | rect. | 1 | 1 |
| 11 | 71.90 | humidity | 80 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 40 | 73.82 | humidity | 90 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 43 | 73.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 46 | 74.14 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 2 |
| 49 | 74.15 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 1 |
| 61 | 74.27 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 64 | 74.40 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 68 | 74.40 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 73 | 74.49 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 74 | 74.57 | wind | 7 | 90 | > th | dose independent | rect. | 8 | 1 |
| 76 | 74.60 | radiation | 20 | 90 | < th | dose independent | rect. | 10 | 1 |
| 80 | 74.64 | temperature | 30 | 10 | < th | dose independent | rect. | 23 | 23 |
| 81 | 74.66 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 84 | 74.78 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 2 |
| 88 | 74.82 | wind | 9 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 93 | 74.88 | humidity | 60 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 109 | 74.91 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 20 |
| 112 | 74.92 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 118 | 74.95 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 124 | 74.96 | humidity | 80 | 10 | > th | dose independent | rect. | 23 | 9 |
| 135 | 75.00 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 137 | 75.00 | radiation | 30 | 30 | < th | dose independent | rect. | 12 | 1 |
| 163 | 75.00 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 193 | 75.03 | temperature | 30 | 30 | > th | dose independent | rect. | 11 | 2 |
| 198 | 75.06 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 203 | 75.07 | humidity | 60 | 30 | < th | dose dependent | rect. | 17 | 17 |
| 205 | 75.08 | temperature | 20 | 90 | < th | dose independent | rect. | 24 | 3 |
| 224 | 75.10 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 229 | 75.12 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 3 |
| 230 | 75.12 | humidity | 60 | 30 | < th | dose independent | rect. | 18 | 16 |
| 232 | 75.12 | temperature | 30 | 30 | > th | dose independent | rect. | 18 | 19 |
| 241 | 75.15 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 260 | 75.17 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 266 | 75.17 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 269 | 75.17 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 286 | 75.18 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 1 |
| 302 | 75.18 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 423 | 75.21 | humidity | 90 | 720 | < th | dose independent | rect. | 3 | 1 |
| 452 | 75.22 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 478 | 75.23 | radiation | 40 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 480 | 75.24 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 483 | 75.24 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 4 |
| 500 | 75.25 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 19 | 4 |
| 662 | 75.37 | humidity | 80 | 90 | > th | dose independent | rect. | 11 | 1 |
| 667 | 75.37 | humidity | 80 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 700 | 75.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 3 |
| 728 | 75.43 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 729 | 75.43 | radiation | 30 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 746 | 75.46 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 781 | 75.47 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 6 |
| 786 | 75.48 | radiation | 20 | 270 | < th | dose independent | rect. | 18 | 18 |
| 899 | 75.56 | temperature | 30 | 10 | > th | dose independent | sin | 8 | NA |
| 908 | 75.56 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 933 | 75.58 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 939 | 75.58 | radiation | 30 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 963 | 75.60 | temperature | 30 | 10 | > th | dose dependent | sin | 9 | NA |
| 999 | 75.63 | radiation | 40 | 90 | < th | dose independent | rect. | 19 | 18 |