Os09g0551000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os09g0551000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.71 | 0.662 | 3.23 | 0.924 | 1.23 | 1.51 | 2.48 | 1.49 | -0.015 | 22.8 | 68.88 | 957 | -- | -- |
| 201.38 | 0.661 | 3.23 | 1.07 | 1.22 | 1.58 | 1.99 | -- | 0.0103 | 22.9 | 67.6 | 984 | -- | -- |
| 217.07 | 0.686 | 3.24 | 0.953 | 1.17 | 1.57 | -- | -0.233 | 0.00621 | 23.4 | 68.27 | 1037 | -- | -- |
| 217.06 | 0.686 | 3.23 | 0.975 | 1.15 | 1.53 | -- | -- | 0.00633 | 23.4 | 67.9 | 1030 | -- | -- |
| 241.54 | 0.724 | 3.21 | 0.862 | -- | 1.36 | -- | 0.931 | -0.0123 | -- | 68 | 1557 | -- | -- |
| 238.01 | 0.723 | 3.25 | 1.05 | 0.646 | -- | 1.82 | -- | -0.139 | 23 | -- | -- | -- | -- |
| 251.62 | 0.743 | 3.25 | 0.974 | 0.64 | -- | -- | -- | -0.147 | 23.6 | -- | -- | -- | -- |
| 242.68 | 0.726 | 3.2 | 0.961 | -- | 1.43 | -- | -- | 0.0176 | -- | 68 | 1568 | -- | -- |
| 240.84 | 0.723 | 3.25 | -- | 1.17 | 1.61 | -- | -- | -0.0798 | 23.4 | 72.1 | 1022 | -- | -- |
| 277.32 | 0.778 | 3.24 | 0.991 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 276.62 | 0.778 | 3.28 | -- | 0.651 | -- | -- | -- | -0.256 | 23.7 | -- | -- | -- | -- |
| 266.03 | 0.76 | 3.22 | -- | -- | 1.6 | -- | -- | -0.0682 | -- | 72.88 | 1585 | -- | -- |
| 303.25 | 0.813 | 3.26 | -- | -- | -- | -- | -- | -0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.54 | humidity | 80 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 2 | 191.67 | humidity | 80 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 6 | 191.99 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 15 |
| 7 | 192.05 | humidity | 80 | 720 | > th | dose dependent | sin | 18 | NA |
| 9 | 192.15 | humidity | 90 | 720 | > th | dose independent | rect. | 14 | 10 |
| 22 | 192.46 | humidity | 90 | 720 | > th | dose independent | sin | 19 | NA |
| 25 | 192.51 | humidity | 90 | 720 | < th | dose independent | rect. | 8 | 16 |
| 30 | 192.66 | humidity | 90 | 720 | > th | dose independent | rect. | 17 | 7 |
| 77 | 193.96 | humidity | 90 | 720 | < th | dose independent | sin | 19 | NA |
| 88 | 194.37 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 99 | 194.67 | humidity | 90 | 720 | > th | dose independent | rect. | 19 | 4 |
| 127 | 195.41 | humidity | 80 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 160 | 195.94 | humidity | 90 | 720 | < th | dose independent | rect. | 13 | 11 |
| 307 | 198.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 376 | 199.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 486 | 199.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |