Os09g0549900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0549900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.38 | 0.485 | 4.41 | 1.41 | 0.706 | -1.23 | -0.401 | 0.741 | -0.0962 | 7.73 | 24.25 | 4459 | -- | -- |
| 106.59 | 0.481 | 4.43 | 1.23 | 0.711 | -1.17 | -0.387 | -- | -0.135 | 7.71 | 24.08 | 4462 | -- | -- |
| 106.84 | 0.481 | 4.4 | 1.41 | 0.707 | -1.23 | -- | 0.776 | -0.0926 | 7.73 | 24.25 | 4440 | -- | -- |
| 107.04 | 0.482 | 4.42 | 1.22 | 0.713 | -1.16 | -- | -- | -0.121 | 7.75 | 23.87 | 4458 | -- | -- |
| 131.12 | 0.533 | 4.39 | 1.56 | -- | -1.34 | -- | 1.23 | 0.0141 | -- | 23.55 | 3595 | -- | -- |
| 147.35 | 0.569 | 4.45 | 0.804 | 0.716 | -- | -0.355 | -- | -0.233 | 8.02 | -- | -- | -- | -- |
| 147.73 | 0.569 | 4.45 | 0.794 | 0.716 | -- | -- | -- | -0.232 | 8.06 | -- | -- | -- | -- |
| 130.29 | 0.532 | 4.45 | 1.23 | -- | -1.18 | -- | -- | -0.143 | -- | 24.77 | 4987 | -- | -- |
| 139.95 | 0.551 | 4.48 | -- | 0.735 | -0.858 | -- | -- | -0.359 | 7.86 | 26.77 | 4479 | -- | -- |
| 175.81 | 0.62 | 4.47 | 0.801 | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
| 164.34 | 0.6 | 4.47 | -- | 0.721 | -- | -- | -- | -0.321 | 7.98 | -- | -- | -- | -- |
| 164.34 | 0.597 | 4.5 | -- | -- | -0.859 | -- | -- | -0.382 | -- | 27.49 | 4962 | -- | -- |
| 192.72 | 0.648 | 4.49 | -- | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 2 | 106.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 15 |
| 5 | 106.10 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 22 | 106.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 87 | 106.63 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 129 | 106.85 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 139 | 106.87 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 142 | 106.87 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 167 | 106.90 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 193 | 106.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 216 | 107.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 307 | 107.38 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 398 | 107.66 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 406 | 107.68 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 457 | 107.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 530 | 107.88 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 619 | 108.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 668 | 108.18 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 773 | 108.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 20 |
| 783 | 108.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 796 | 108.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 815 | 108.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 829 | 108.66 | temperature | 25 | 4320 | > th | dose independent | sin | 5 | NA |
| 857 | 108.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 21 |
| 860 | 108.73 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 865 | 108.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 869 | 108.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 873 | 108.75 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |
| 875 | 108.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 877 | 108.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 883 | 108.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 921 | 108.82 | temperature | 10 | 4320 | > th | dose dependent | sin | 0 | NA |
| 947 | 108.86 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 973 | 108.89 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 6 |